{ "format": "preylab-design-reference", "referenceVersion": 1, "modelVersion": 4, "dnaSchemaVersion": 1, "generatedFrom": [ "model.js", "physical.js", "ecology.js", "grazer.js", "propagules.js", "chemistry.js", "population.js", "index.cfm" ], "status": { "implemented": "implemented and source-derived", "experimental": "experimental engine behavior", "unavailable": "not implemented" }, "environment": { "referenceVersion": 1, "modelVersion": 4, "coordinates": { "x": [ 0, 1 ], "y": [ 0, 1 ], "z": [ 0, 1 ], "depthAspect": 0.12, "unit": "normalized dish widths", "volumeScale": "cuberoot(clamp(volume,1,1000))", "volumeRange": [ 1, 1000 ] }, "time": { "stepMs": 20, "unit": "simulated milliseconds", "offlineCatchUp": false }, "field": { "dimensions": { "x": 8, "y": 8, "z": 3 }, "maxConcentration": 4, "maxPatches": 256, "sampling": "trilinear eight-corner interpolation plus local Gaussian patches" }, "lamp": { "height": 0.3, "lightRange": [ 0, 100 ], "pitchDegrees": [ 0, 60 ], "azimuthDegrees": [ 0, 360 ], "turbidity": [ 0, 8 ], "beamDiameterPercent": [ 10, 100 ], "defaultCycle": { "enabled": false, "periodMs": 120000, "duty": 0.5, "transitionMs": 10000, "phaseMs": 0, "anchorAt": 0 } }, "biology": { "compoundRegistryVersion": 1, "compounds": { "organic": { "label": "Organic volatile", "decayMs": 9000, "affinity": { "organic": 1, "alarm": 0.16, "social": 0.22 } }, "alarm": { "label": "Alarm volatile", "decayMs": 7000, "affinity": { "organic": 0.18, "alarm": 1, "social": 0.24 } }, "social": { "label": "Social volatile", "decayMs": 15000, "affinity": { "organic": 0.28, "alarm": 0.14, "social": 1 } }, "irritant": { "label": "Irritant", "decayMs": 7500, "affinity": { "organic": 0.08, "alarm": 0.32, "social": 0.04 } }, "motor": { "label": "Motor inhibitor", "decayMs": 7500, "affinity": { "organic": 0.06, "alarm": 0.25, "social": 0.05 } }, "sensory": { "label": "Sensory inhibitor", "decayMs": 7500, "affinity": { "organic": 0.05, "alarm": 0.27, "social": 0.06 } } }, "legacyChannelMap": { "mate": "social", "aversive": "alarm", "kin": "social", "food": "organic", "rot": "organic", "toxin-irritant": "irritant", "toxin-motor": "motor", "toxin-sensory": "sensory", "alga-warning": "alarm", "alga-surplus": "organic" }, "chemicalChannels": [ "mate", "aversive", "kin", "food", "rot", "toxin-irritant", "toxin-motor", "toxin-sensory", "alga-warning", "alga-surplus" ], "chemicalLifetimeMs": { "mate": 30000, "aversive": 12000, "kin": 10000, "food": 14000, "rot": 20000, "toxin-irritant": 12000, "toxin-motor": 14000, "toxin-sensory": 14000, "alga-warning": 9000, "alga-surplus": 16000 }, "chemicalDecayMs": { "mate": 18000, "other": 7500 }, "chemicalPacketCap": 256, "propaguleCap": 128, "consumerSenseMs": 200, "consumerMemoryMs": 1800, "handlingMs": 600, "feedCooldownMs": 1400 }, "sources": [ "ecology.js", "model.js", "physical.js", "chemistry.js", "propagules.js", "grazer.js" ], "environmentImportSupported": false }, "environmentControls": { "volume": { "type": "range", "min": 1, "max": 1000, "step": 1, "uiInitial": 200, "source": "index.cfm:input; verify actual state defaults separately" }, "cell-limit": { "type": "range", "min": 1, "max": 512, "step": 1, "uiInitial": 128, "source": "index.cfm:input; verify actual state defaults separately" }, "support-limit": { "type": "range", "min": 0, "max": 100, "step": 5, "uiInitial": 25, "source": "index.cfm:input; verify actual state defaults separately" }, "mutation-rate": { "type": "range", "min": 0, "max": 100, "step": 1, "uiInitial": 12, "source": "index.cfm:input; verify actual state defaults separately" }, "temperature": { "type": "range", "min": 5, "max": 40, "step": 1, "uiInitial": 22, "source": "index.cfm:input; verify actual state defaults separately" }, "nutrients": { "type": "range", "min": 0, "max": 100, "step": 1, "uiInitial": 55, "source": "index.cfm:input; verify actual state defaults separately" }, "drift": { "type": "range", "min": 0, "max": 100, "step": 1, "uiInitial": 35, "source": "index.cfm:input; verify actual state defaults separately" }, "auto-current-strength": { "type": "range", "min": 0, "max": 100, "step": 1, "uiInitial": 45, "source": "index.cfm:input; verify actual state defaults separately" }, "auto-nutrient-amount": { "type": "range", "min": 0, "max": 24, "step": 1, "uiInitial": 12, "source": "index.cfm:input; verify actual state defaults separately" }, "light": { "type": "range", "min": 0, "max": 100, "step": 1, "uiInitial": 68, "source": "index.cfm:input; verify actual state defaults separately" }, "beamDiameter": { "type": "range", "min": 10, "max": 100, "step": 1, "uiInitial": 100, "source": "index.cfm:input; verify actual state defaults separately" }, "pitch": { "type": "range", "min": 0, "max": 60, "step": 1, "uiInitial": 0, "source": "index.cfm:input; verify actual state defaults separately" }, "azimuth": { "type": "range", "min": 0, "max": 360, "step": 1, "uiInitial": 0, "source": "index.cfm:input; verify actual state defaults separately" }, "cycle-period": { "type": "range", "min": 10, "max": 3600, "step": 10, "uiInitial": 120, "source": "index.cfm:input; verify actual state defaults separately" }, "cycle-duty": { "type": "range", "min": 0, "max": 100, "step": 5, "uiInitial": 50, "source": "index.cfm:input; verify actual state defaults separately" }, "cycle-fade": { "type": "range", "min": 0, "max": 300, "step": 5, "uiInitial": 10, "source": "index.cfm:input; verify actual state defaults separately" }, "cycle-phase": { "type": "range", "min": 0, "max": 99, "step": 1, "uiInitial": 0, "source": "index.cfm:input; verify actual state defaults separately" }, "turbidity": { "type": "range", "min": 0, "max": 8, "step": 0.1, "uiInitial": 1, "source": "index.cfm:input; verify actual state defaults separately" } }, "featureDefaults": { "chemicalCues": true, "contactExchange": true, "fusionPropagules": true, "acquiredDna": true, "toxicEffects": true, "algaeCommunication": true }, "equations": { "structuralMass": { "source": "model.js:structuralMass", "rule": "bodySize^3 × (alga ? biomassDensity × (1 + 0.1 × storageInvestment) : 1) × (1 + 0.035 × sensorCost)", "units": "modeled mineral mass", "sensorCostGenes": [ "ambientSense", "directionalSense", "chemicalSense", "disturbanceSense", "emissionCapacity", "toxinSynthesis", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification" ] }, "bodyRadius": { "source": "physical.js:bodyRadius", "rule": "mature phenotype radius × cbrt(actual biomass / structuralMass) / cbrt(clamped dish volume)", "units": "normalized XY dish width" }, "bodyDepthRadius": { "source": "physical.js:bodyDepth", "rule": "(0.46 / 7) × bodyRadius / 0.048", "units": "normalized Z" }, "bodyContact": { "source": "physical.js:bodyMetric", "rule": "sqrt((Δx/(r1+r2))² + (Δy/(r1+r2))² + (Δz/(depth1+depth2))²); overlap below 1 − 0.0001", "units": "dimensionless" }, "consumerMouth": { "source": "grazer.js:edible/biteContact", "rule": "prey actual radius ≤ hunter phenotype radius × feedingAperture; prey biomass must fit remaining vacuole and meal energy must fit 200 − stored meal energy; bite reach is family-specific and can be blocked by other bodies", "units": "normalized radius and modeled mass" }, "fuelTaper": { "source": "model.js:movementFuelFactor", "rule": "log1p(9 × clamp(energy / slowdownThreshold,0,1)) / log(10)", "units": "fraction of active thrust" }, "temperature": { "source": "model.js:step", "rule": "max(0,1 − abs(temperature − thermalOptimum) / 25)", "units": "gain multiplier" }, "photosynthesis": { "source": "model.js:step", "rule": "photoCapacity × light/(20+light) × nutrient/(0.35+nutrient) × nutrientCapacity × temperatureFactor × dt; actual gain also needs finite mineral withdrawal at 0.4 mass per energy", "units": "modeled energy per step" }, "lamp": { "source": "ecology.js:lightTransmission", "rule": "full-field exp(−turbidity × depth); narrow beam additionally uses pitch/azimuth, inverse-square distance, smoothstep edge and water path attenuation", "units": "fraction of lamp intensity" }, "mutation": { "source": "population.js:mutateGenome", "rule": "for each locus independently, Bernoulli(mutationRate); delta uniform in [−0.06,0.06] × allele span; clamp or circular-wrap; unchanged draws are not recorded", "units": "allele units" } }, "controllers": { "consumers": { "families": [ "ciliate-grazer", "herbivorous-flagellate", "raptorial-ciliate", "apex-ciliate", "floor-ciliate-hunter", "openwater-hunter", "omnivorous-ciliate" ], "source": "grazer.js:stepGrazer", "senseIntervalMs": 200, "memoryMs": 1800, "decisionCommitMs": 300, "handlingMs": 600, "feedingCooldownMs": 1400, "priority": [ "no fuel", "nearby threat", "contact reversal", "satiation / digestion / off-peak rest", "feeding cooldown", "eligible local prey", "carrion where supported", "last seen position", "explore" ], "description": "Physical prey sensing is local and family-diet gated. Hunger controls pursuit, not whether an eligible body registers. Dark diurnal hunters lose some visual range. Blocked prey receive a bounded cooldown." }, "algae": { "families": [ "flagellar-alga" ], "source": "model.js:updateController", "senseIntervalMs": 200, "priority": [ "usable energy", "sample local light and nutrient probes", "choose limiting light, mineral or temperature", "steer up a sampled local gradient or explore" ], "description": "Probes do not supply a global light or nutrient map. Chemical responses are separate local samples." }, "prototypes": { "families": [ "amoeboid-prototype", "surface-glider-prototype", "passive-drifter-prototype", "contractile-prototype" ], "source": "locomotion.js and population.js", "senseIntervalMs": null, "priority": null, "description": "Several chassis are development seeds. No single shared hunt controller or priority order applies." } }, "chemical": [ { "channel": "mate", "trigger": "living compatible alga; secretion on mating-readiness event", "emitterGate": "alga group, chemicalSense ≥0.2, crossAffinity ≥0.5", "receptorGate": "same alga group and receptor gate", "resource": "paid body mass + 20 energy per mass", "lifetimeMs": 30000, "decayTimeConstantMs": 18000, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "aversive", "trigger": "threatened living cell with chemicalSense and disturbanceSense", "emitterGate": "chemicalSense ≥0.2, disturbanceSense ≥0.3", "receptorGate": "chemicalSense ≥0.2, disturbanceSense ≥0.3", "resource": "paid body mass + 20 energy per mass", "lifetimeMs": 12000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "kin", "trigger": "moving social cell, flocking ≥0.35 and fuel ≥35; residual 0.000045 mass/s", "emitterGate": "chemicalSense ≥0.2, flocking ≥0.35", "receptorGate": "same family, chemicalSense ≥0.2, flocking ≥0.35", "resource": "paid body mass + 20 energy per mass", "lifetimeMs": 10000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "food", "trigger": "fed living body passive odor or finite body release", "emitterGate": "chemicalSense ≥0.2 and eligible fed state", "receptorGate": "foodCueGroups includes source family", "resource": "passive odor transferred from accounted body; active release paid", "lifetimeMs": 14000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.00000015/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "rot", "trigger": "corpse decay proportional to accounted remains", "emitterGate": "passive corpse budget", "receptorGate": "crawler or omnivore, carrion group, chemicalSense ≥0.2", "resource": "no active secretion cost; comes from corpse mass", "lifetimeMs": 20000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.00000015/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "toxin-irritant", "trigger": "threat/contact burst from finite toxin store", "emitterGate": "toxinSynthesis ≥0.5 and toxinRelease ≥0.5", "receptorGate": "chemicalSense ≥0.2 and disturbanceSense; dose physiology separate", "resource": "prepaid toxin store; no residual toxin default", "lifetimeMs": 12000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "toxin-motor", "trigger": "prey/contact burst from finite toxin store", "emitterGate": "toxinSynthesis ≥0.5 and toxinRelease ≥0.5", "receptorGate": "chemicalSense ≥0.2 and disturbanceSense; dose physiology separate", "resource": "prepaid toxin store; no residual toxin default", "lifetimeMs": 14000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "toxin-sensory", "trigger": "prey/contact burst from finite toxin store", "emitterGate": "toxinSynthesis ≥0.5 and toxinRelease ≥0.5", "receptorGate": "chemicalSense ≥0.2 and disturbanceSense; dose physiology separate", "resource": "prepaid toxin store; no residual toxin default", "lifetimeMs": 14000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "alga-warning", "trigger": "algal disturbance", "emitterGate": "alga, chemicalSense ≥0.2, disturbanceSense ≥0.4", "receptorGate": "alga with chemicalSense ≥0.2; weighted by disturbanceSense", "resource": "paid body mass + 20 energy per mass", "lifetimeMs": 9000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] }, { "channel": "alga-surplus", "trigger": "sustained surplus with hysteresis then taper; residual trajectory release", "emitterGate": "alga, chemicalSense ≥0.2, photosyntheticInvestment ≥0.6", "receptorGate": "alga with chemicalSense ≥0.2; weighted by photosyntheticInvestment", "resource": "paid body mass + 20 energy per mass", "lifetimeMs": 16000, "decayTimeConstantMs": 7500, "detectionThreshold": "0.000001/max(1,volume)", "source": [ "chemistry.js:emitter/receptor/releaseChemical/releasePassiveOdor/stepChemicalMedium/sampleChemical", "population.js:chemical release schedule" ] } ], "reproduction": { "division": { "flagellar-alga": { "minimumAgeMsAtTempo1": 30000, "minimumEnergy": 25, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "ciliate-grazer": { "minimumAgeMsAtTempo1": 50000, "minimumEnergy": 55, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "herbivorous-flagellate": { "minimumAgeMsAtTempo1": 45000, "minimumEnergy": 55, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "raptorial-ciliate": { "minimumAgeMsAtTempo1": 65000, "minimumEnergy": 65, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "apex-ciliate": { "minimumAgeMsAtTempo1": 100000, "minimumEnergy": 75, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "omnivorous-ciliate": { "minimumAgeMsAtTempo1": 80000, "minimumEnergy": 65, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "openwater-hunter": { "minimumAgeMsAtTempo1": 110000, "minimumEnergy": 85, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "floor-ciliate-hunter": { "minimumAgeMsAtTempo1": 100000, "minimumEnergy": 80, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "amoeboid-prototype": { "minimumAgeMsAtTempo1": 100000, "minimumEnergy": 40, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "surface-glider-prototype": { "minimumAgeMsAtTempo1": 100000, "minimumEnergy": 40, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "passive-drifter-prototype": { "minimumAgeMsAtTempo1": 100000, "minimumEnergy": 40, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" }, "contractile-prototype": { "minimumAgeMsAtTempo1": 100000, "minimumEnergy": 40, "minimumBodyMass": "1.4 × mature structural mass", "energyCost": 3, "additionalGates": [ "living cell cap", "support family breeding share where applicable", "alga recent surplus or near-full fuel", "not dormant or recovering zygote", "physical room for both daughters" ], "source": "population.js:divide/divisionAge/divisionEnergy/divisionSurplus" } }, "contactExchange": { "featureToggle": "contactExchange", "requiredPhysicalContactMs": 1200, "maxGapMs": 240, "readyAgeMs": 30000, "minimumEnergy": 50, "minimumCrossAffinity": 0.5, "contactEnergyCostPerParent": 2, "commitment": "stored partner genome may be used in one daughter at later division", "source": "population.js:resolveCrossbreeding" }, "propagule": { "featureToggle": "fusionPropagules", "gamete": { "family": "flagellar-alga", "fusionCapacityAtLeast": 0.7, "crossAffinityAtLeast": 0.5, "parentAgeMs": 30000, "cooldownMs": 30000, "minimumMass": "1.15 × mature structural mass + 0.20", "minimumEnergy": 30, "releaseMass": 0.2, "releaseEnergy": 10, "viabilityMs": 45000, "minimumFusionAgeMs": 5000, "oppositeMatingType": true, "differentSource": true, "encounterRadius": ".02 / cbrt(volume)", "zygoteRecoveryMs": 8000 }, "spore": { "family": "amoeboid-prototype", "sporeInvestmentAtLeast": 0.7, "parentAgeMs": 30000, "cooldownMs": 30000, "minimumMass": "1.15 × mature structural mass + 0.25", "minimumEnergy": 32, "releaseMass": 0.25, "releaseEnergy": 12, "viabilityMs": 90000, "minimumGerminationAgeMs": 5000, "organicThreshold": 0.002, "spaceAndSupportSlot": true } }, "sources": [ "population.js:divide/resolveCrossbreeding/stepPropaguleEcology/birthFromPropagule", "propagules.js:propaguleReadiness/releasePropagule/compatibleGametes" ] }, "families": [ { "id": "flagellar-alga", "label": "Flagellated algae", "biologicalFamily": "alga", "ecologicalRole": "producer", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "flagellum", "resource": "light + mineral", "reproduction": "binary fission", "render": "alga", "genomeVersion": 4, "geneCount": 65, "defaultGenotype": { "family": "flagellar-alga", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.029, "matureBodyDepthRadius": 0.039702380952380954, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.029, "thrust": 6.3e-8, "headingMemory": 2.335, "photoCapacity": 0.00323, "nutrientCapacity": 0.6625000000000001, "optimum": 22, "maintenance": 0.00020625000000000003, "activeCost": 0.000045499999999999995 }, "physicalMouthLimit": null, "physicalSensorRange": null, "propagule": null, "capabilityGates": { "gamete": { "fusionCapacity": 0.7, "crossAffinity": 0.5, "expressed": false }, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "light and dissolved mineral", "implementationStatus": "implemented" }, { "id": "ciliate-grazer", "label": "Glassmouth ciliate", "biologicalFamily": "ciliate", "ecologicalRole": "grazer", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "cilia", "resource": "living algae", "reproduction": "binary fission", "render": "ciliate", "genomeVersion": 4, "geneCount": 52, "defaultGenotype": { "family": "ciliate-grazer", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.031, "matureBodyDepthRadius": 0.04244047619047619, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.031, "thrust": 0.00000528, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 1.74, "processingRate": 0.000012, "maintenance": 0.0002711, "activeCost": 0.000096 }, "physicalMouthLimit": 0.0403, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "living algae", "implementationStatus": "implemented" }, { "id": "herbivorous-flagellate", "label": "Greater herbivorous flagellate", "biologicalFamily": "flagellate", "ecologicalRole": "grazer", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "flagellum", "resource": "living algae", "reproduction": "binary fission", "render": "herbivore", "genomeVersion": 4, "geneCount": 52, "defaultGenotype": { "family": "herbivorous-flagellate", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.052, "matureBodyDepthRadius": 0.07119047619047618, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.052, "thrust": 0.0000024, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 1.74, "processingRate": 0.000012, "maintenance": 0.0002711, "activeCost": 0.000096 }, "physicalMouthLimit": 0.0676, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "living algae", "implementationStatus": "implemented" }, { "id": "raptorial-ciliate", "label": "Raptorial ciliate", "biologicalFamily": "ciliate", "ecologicalRole": "predator", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "cilia", "resource": "living grazers + omnivores", "reproduction": "binary fission", "render": "ciliate", "genomeVersion": 4, "geneCount": 52, "defaultGenotype": { "family": "raptorial-ciliate", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.047, "matureBodyDepthRadius": 0.0643452380952381, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.047, "thrust": 0.0000057000000000000005, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 2.52, "processingRate": 0.000012, "maintenance": 0.0002711, "activeCost": 0.000096 }, "physicalMouthLimit": 0.0611, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "living ciliates, herbivorous flagellates and omnivores", "implementationStatus": "implemented" }, { "id": "apex-ciliate", "label": "Apex hunter", "biologicalFamily": "ciliate", "ecologicalRole": "predator", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "cilia", "resource": "living raptors + omnivores + amoebas", "reproduction": "binary fission", "render": "ciliate", "genomeVersion": 4, "geneCount": 53, "defaultGenotype": { "family": "apex-ciliate", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.061, "matureBodyDepthRadius": 0.08351190476190475, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.061, "thrust": 0.0000036, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 3.36, "processingRate": 0.000012, "maintenance": 0.0003811, "activeCost": 0.00012 }, "physicalMouthLimit": 0.0793, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "raptorial ciliates, omnivores and crawlers; smaller same-family prey only with cannibalism ≥0.55", "implementationStatus": "implemented" }, { "id": "omnivorous-ciliate", "label": "Mosaicmouth omnivore", "biologicalFamily": "ciliate", "ecologicalRole": "mixed feeder", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "cilia", "resource": "living algae + swimming herbivores", "reproduction": "binary fission", "render": "ciliate", "genomeVersion": 4, "geneCount": 52, "defaultGenotype": { "family": "omnivorous-ciliate", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.049, "matureBodyDepthRadius": 0.06708333333333333, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.049, "thrust": 0.0000054, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 2.64, "processingRate": 0.000012, "maintenance": 0.00033109999999999997, "activeCost": 0.000096 }, "physicalMouthLimit": 0.0637, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "algae, herbivores and carrion", "implementationStatus": "implemented" }, { "id": "openwater-hunter", "label": "Widejaw hunter", "biologicalFamily": "ciliate", "ecologicalRole": "predator", "habitat": "open water", "metabolismStatus": "supported", "locomotion": "cilia", "resource": "living herbivores and hunters", "reproduction": "binary fission", "render": "ciliate", "genomeVersion": 4, "geneCount": 53, "defaultGenotype": { "family": "openwater-hunter", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.067, "matureBodyDepthRadius": 0.09172619047619049, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.067, "thrust": 0.0000063, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 8, "processingRate": 0.000018, "maintenance": 0.00045109999999999996, "activeCost": 0.00015 }, "physicalMouthLimit": 0.08710000000000001, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "herbivores and hunters; smaller same-family prey only with cannibalism ≥0.55", "implementationStatus": "implemented" }, { "id": "floor-ciliate-hunter", "label": "Amoeba hunter", "biologicalFamily": "fictional floor hunter", "ecologicalRole": "predator", "habitat": "floor-associated", "metabolismStatus": "supported", "locomotion": "cilia", "resource": "living floor amoebas", "reproduction": "binary fission", "render": "ciliate", "genomeVersion": 4, "geneCount": 52, "defaultGenotype": { "family": "floor-ciliate-hunter", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.048, "matureBodyDepthRadius": 0.06571428571428571, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.048, "thrust": 0.0000072, "headingMemory": 2.335, "optimum": 22, "sensingRadius": 0.17, "mouthRatio": 1.3, "vacuoleCapacity": 2.88, "processingRate": 0.00002, "maintenance": 0.0004211, "activeCost": 0.000132 }, "physicalMouthLimit": 0.062400000000000004, "physicalSensorRange": 0.17, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "amoeboid crawlers", "implementationStatus": "implemented" }, { "id": "amoeboid-prototype", "label": "Amoeboid crawler", "biologicalFamily": "amoeboid", "ecologicalRole": "scavenger", "habitat": "floor-associated", "metabolismStatus": "experimental", "locomotion": "amoeboid", "resource": "carrion + detritus", "reproduction": "binary fission", "render": "crawler", "genomeVersion": 4, "geneCount": 46, "defaultGenotype": { "family": "amoeboid-prototype", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.029, "matureBodyDepthRadius": 0.039702380952380954, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.029, "thrust": 5.2499999999999994e-8, "headingMemory": 2.335, "optimum": 22, "maintenance": 0.00008999999999999999, "activeCost": 0.000035 }, "physicalMouthLimit": null, "physicalSensorRange": null, "propagule": null, "capabilityGates": { "gamete": null, "spore": { "sporeInvestment": 0.7, "expressed": false } }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "floor corpses and detritus", "implementationStatus": "experimental" }, { "id": "surface-glider-prototype", "label": "Surface glider · development seed", "biologicalFamily": "fictional glider", "ecologicalRole": "producer", "habitat": "floor-associated", "metabolismStatus": "experimental", "locomotion": "glider", "resource": "light + mineral", "reproduction": "binary fission", "render": "glider", "genomeVersion": 4, "geneCount": 46, "defaultGenotype": { "family": "surface-glider-prototype", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.029, "matureBodyDepthRadius": 0.039702380952380954, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.029, "thrust": 5.2499999999999994e-8, "headingMemory": 2.335, "optimum": 22, "maintenance": 0.00008999999999999999, "activeCost": 0.000035 }, "physicalMouthLimit": null, "physicalSensorRange": null, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "light and mineral; development seed", "implementationStatus": "experimental" }, { "id": "passive-drifter-prototype", "label": "Passive drifter · development seed", "biologicalFamily": "fictional drifter", "ecologicalRole": "producer", "habitat": "open water", "metabolismStatus": "experimental", "locomotion": "drift", "resource": "light + mineral", "reproduction": "binary fission", "render": "drifter", "genomeVersion": 4, "geneCount": 43, "defaultGenotype": { "family": "passive-drifter-prototype", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.029, "matureBodyDepthRadius": 0.039702380952380954, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.029, "thrust": 0, "headingMemory": 2.15, "optimum": 22, "maintenance": 0.00008999999999999999, "activeCost": 0 }, "physicalMouthLimit": null, "physicalSensorRange": null, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "light and mineral; development seed", "implementationStatus": "experimental" }, { "id": "contractile-prototype", "label": "Attached contractile cell · development seed", "biologicalFamily": "fictional contractile cell", "ecologicalRole": "producer", "habitat": "anchored", "metabolismStatus": "experimental", "locomotion": "contractile", "resource": "light + mineral", "reproduction": "binary fission", "render": "attached", "genomeVersion": 4, "geneCount": 44, "defaultGenotype": { "family": "contractile-prototype", "modelVersion": 4, "structuralMassTarget": 1, "matureBodyRadius": 0.029, "matureBodyDepthRadius": 0.039702380952380954, "contactShape": "axis-aligned ellipsoid", "contactTolerance": 0.0001, "decorativeAppendages": "cilia, flagella, bloom and glow are not collision bodies", "phenotype": { "radius": 0.029, "thrust": 9e-8, "headingMemory": 2.15, "optimum": 22, "maintenance": 0.00008999999999999999, "activeCost": 0.00006 }, "physicalMouthLimit": null, "physicalSensorRange": null, "propagule": null, "capabilityGates": { "gamete": null, "spore": null }, "source": { "phenotype": "model.js:phenotype", "structure": "model.js:structuralMass", "collision": "physical.js:bodyRadius/bodyDepth", "reproduction": "propagules.js:propaguleKind" } }, "actualDiet": "light and mineral; high-contractility variants may collect suspended detritus", "implementationStatus": "experimental" } ], "unknowns": [ "No guaranteed net energy or survival score without local food, activity, history and encounters.", "No closed-form controller outcome through moving obstacles, chemical crossings or depth bypass.", "Rendered anatomy is not a deformable physical mesh." ] }