{ "format": "preylab-gene-source-index", "version": 1, "modelVersion": 4, "meaning": "Literal source occurrences for audit. Some are declarations, display use or validation; the author must inspect linked runtime code before claiming expression.", "families": { "flagellar-alga": [ "bodySize", "metabolicPace", "biomassDensity", "divisionTempo", "foodEnergy", "debrisMetabolism", "crossAffinity", "fusionCapacity", "matingType", "pigmentR", "pigmentG", "pigmentB", "storageInvestment", "reserveAllocation", "mobilization", "dormancy", "coatInvestment", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "photosyntheticInvestment", "nutrientUptake", "thermalOptimum", "adhesion", "photoGlowThreshold", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "ciliate-grazer": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "herbivorous-flagellate": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "raptorial-ciliate": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "apex-ciliate": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand", "cannibalism" ], "omnivorous-ciliate": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "openwater-hunter": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand", "cannibalism" ], "floor-ciliate-hunter": [ "bodySize", "metabolicPace", "divisionTempo", "propulsion", "slowdownThreshold", "turnPersistence", "flocking", "sensingRange", "feedingAperture", "processing", "storage", "acquisitionCapacity", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "amoeboid-prototype": [ "bodySize", "metabolicPace", "propulsion", "slowdownThreshold", "turnPersistence", "thermalOptimum", "sporeInvestment", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "surface-glider-prototype": [ "bodySize", "metabolicPace", "propulsion", "slowdownThreshold", "turnPersistence", "thermalOptimum", "sporeInvestment", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "passive-drifter-prototype": [ "bodySize", "metabolicPace", "buoyancy", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ], "contractile-prototype": [ "bodySize", "metabolicPace", "slowdownThreshold", "contractility", "thermalOptimum", "rhythmPhase", "rhythmStrength", "twilightPreference", "entrainment", "ambientSense", "lightPreference", "lightTolerance", "directionalSense", "spectralCenter", "spectralWidth", "chemicalSense", "organicProduction", "organicReception", "organicResponse", "alarmProduction", "alarmReception", "alarmResponse", "socialProduction", "socialReception", "socialResponse", "lightProgram", "organicProgram", "alarmProgram", "socialProgram", "releaseThreshold", "releaseGain", "releasePulse", "releaseCooldown", "releaseReserve", "toxinSynthesis", "toxinRelease", "irritantResistance", "motorResistance", "sensoryResistance", "detoxification", "disturbanceSense", "emissionCapacity", "emissionPower", "emissionBand" ] }, "genes": { "acquisitionCapacity": [ { "file": "../model.js", "line": 103, "excerpt": " acquisitionCapacity:{min:0,max:1,default:0,unit:'fragment retention',category:'experimental reproduction',rol…" }, { "file": "../model.js", "line": 158, "excerpt": "…feedingAperture+.000018*g.storage+.000025*g.flocking+.000025*(g.cannibalism||0)+.00002*(g.acquisitionCapacity||0)+.000025*Math.max(0,g.divisionTempo-1)+(normalized.locomotionFamily===OMNIVORE_FAMILY?…" }, { "file": "../model.js", "line": 173, "excerpt": "…Range','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','divisionTempo']," }, { "file": "../population.js", "line": 53, "excerpt": "…erance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease'…" }, { "file": "../population.js", "line": 326, "excerpt": "…onId){const p=state.population,g=consumer.genome.genes;if(!p.experiments?.acquiredDna||(g.acquisitionCapacity??0)<.55||consumer.pendingHgt||consumer.energy<5)return {ok:false,reason:'Acquisition unav…" }, { "file": "../population.js", "line": 326, "excerpt": "…||consumer.energy<5)return {ok:false,reason:'Acquisition unavailable'};if(random(p)>.08*g.acquisitionCapacity)return {ok:false,reason:'Fragment did not survive digestion'};const rules=geneRules(consu…" } ], "adhesion": [ { "file": "../model.js", "line": 87, "excerpt": " adhesion:{min:0,max:1,default:0,unit:'surface investment',category:'body',role:'Compatible cell ad…" }, { "file": "../model.js", "line": 87, "excerpt": "…on:{min:0,max:1,default:0,unit:'surface investment',category:'body',role:'Compatible cell adhesion',effect:'Forms weak short-range bonds with other adhesive algae',cost:'Maintaining the co…" }, { "file": "../model.js", "line": 138, "excerpt": " if((g.adhesion||0)>.8&&(g.emissionCapacity||0)>.9&&(g.emissionBand||0)<.08)return 0;" }, { "file": "../model.js", "line": 167, "excerpt": "…000055*g.bodySize**2+.000045*g.photosyntheticInvestment+.000035*g.nutrientUptake+.00004*g.adhesion+.000025*g.flocking+.00002*g.crossAffinity+.00003*(g.fusionCapacity||0)+.00003*Math.max(0,…" }, { "file": "../model.js", "line": 174, "excerpt": "…ersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy…" }, { "file": "../population.js", "line": 53, "excerpt": "…soryResistance','detoxification'].includes(key)||genome.locomotionFamily===ALGA_FAMILY&&['adhesion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reser…" }, { "file": "../population.js", "line": 275, "excerpt": " alga.cell.x=.44;alga.cell.y=.5;alga.genome=normalizeGenome({genes:{adhesion:.28,propulsion:.31}});p.records.find(record=>record.id===alga.id).genome=copy(alga.genome…" }, { "file": "../population.js", "line": 504, "excerpt": "const adhesion=m=>m.genome.locomotionFamily===ALGA_FAMILY&&(!m.dormancy||m.dormancy.mode==='active')?(m.…" }, { "file": "../population.js", "line": 504, "excerpt": "…locomotionFamily===ALGA_FAMILY&&(!m.dormancy||m.dormancy.mode==='active')?(m.genome.genes.adhesion||0):0;" }, { "file": "../population.js", "line": 506, "excerpt": " for(const bond of p.bonds||[]){const a=byId.get(bond.a),b=byId.get(bond.b);if(!a||!b||!adhesion(a)||!adhesion(b))continue;const dist=Math.hypot(a.cell.x-b.cell.x,a.cell.y-b.cell.y,(a.ce…" }, { "file": "../population.js", "line": 506, "excerpt": "…ond of p.bonds||[]){const a=byId.get(bond.a),b=byId.get(bond.b);if(!a||!b||!adhesion(a)||!adhesion(b))continue;const dist=Math.hypot(a.cell.x-b.cell.x,a.cell.y-b.cell.y,(a.cell.z-b.cell.z)…" }, { "file": "../population.js", "line": 507, "excerpt": "…lume))+grid.maxReach))){if(order.get(b)<=i)continue;const a=p.living[i],strength=Math.min(adhesion(a),adhesion(b));if(strength<=0||(degrees.get(a.id)||0)>=2||(degrees.get(b.id)||0)>=2||bon…" }, { "file": "../population.js", "line": 507, "excerpt": "…maxReach))){if(order.get(b)<=i)continue;const a=p.living[i],strength=Math.min(adhesion(a),adhesion(b));if(strength<=0||(degrees.get(a.id)||0)>=2||(degrees.get(b.id)||0)>=2||bondKeys.has(a.…" }, { "file": "../population.js", "line": 551, "excerpt": "…id=gridFor(state);checkpoint('physics grid');solveAdhesion(state,physicsGrid);checkpoint('adhesion');separateCells(state,physicsGrid);checkpoint('collision');state.elapsed+=dt;state.enviro…" }, { "file": "../population.js", "line": 626, "excerpt": "…b||!positive(b.rest)||b.rest>.3||!positive(b.strength)||b.strength>1)throw Error('Invalid adhesion bond');const a=liveById.get(b.a),c=liveById.get(b.b);if(!a||!c)return false;const key=[b.…" }, { "file": "../population.js", "line": 626, "excerpt": "…ort().join('|');if(seenBonds.has(key)||(degree.get(b.a)||0)>=2||(degree.get(b.b)||0)>=2||!adhesion(a)||!adhesion(c))throw Error('Invalid adhesion bond');seenBonds.add(key);degree.set(b.a,(…" }, { "file": "../population.js", "line": 626, "excerpt": "…);if(seenBonds.has(key)||(degree.get(b.a)||0)>=2||(degree.get(b.b)||0)>=2||!adhesion(a)||!adhesion(c))throw Error('Invalid adhesion bond');seenBonds.add(key);degree.set(b.a,(degree.get(b.a…" }, { "file": "../population.js", "line": 626, "excerpt": "…get(b.a)||0)>=2||(degree.get(b.b)||0)>=2||!adhesion(a)||!adhesion(c))throw Error('Invalid adhesion bond');seenBonds.add(key);degree.set(b.a,(degree.get(b.a)||0)+1);degree.set(b.b,(degree.g…" }, { "file": "../appearance.js", "line": 81, "excerpt": " if((genes.adhesion||0)>.8&&(genes.emissionCapacity||0)>.9&&(genes.emissionBand||0)<.08)return looks.polar_ch…" }, { "file": "../appearance.js", "line": 88, "excerpt": " if(genes.adhesion>=.8&&genes.flocking>=.85)return looks.volvox;" }, { "file": "../appearance.js", "line": 89, "excerpt": " if(genes.adhesion>=.8&&genes.bodySize>=1.4)return looks.kelp;" }, { "file": "../appearance.js", "line": 91, "excerpt": " if((genes.adhesion||0)>=.55)return looks.chain;" }, { "file": "../appearance.js", "line": 92, "excerpt": " if((genes.adhesion||0)>=.15)return looks.clumping;" } ], "alarmProduction": [ { "file": "../model.js", "line": 127, "excerpt": "…rResistance','sensoryResistance','detoxification','organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'];" }, { "file": "../regulation.js", "line": 21, "excerpt": " alarmProgram:(g.alarmProduction||0)>0?3:0," }, { "file": "../compounds.js", "line": 13, "excerpt": "…eception:'organicReception',response:'organicResponse'}),alarm:Object.freeze({production:'alarmProduction',reception:'alarmReception',response:'alarmResponse'}),social:Object.freeze({production:'…" }, { "file": "../compounds.js", "line": 22, "excerpt": " alarmProduction:sense*disturbance,alarmReception:sense*disturbance,alarmResponse:-.8," }, { "file": "../signals.js", "line": 48, "excerpt": " const apparatus=['organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'].reduce((sum,key)=>sum+(g[key]||0)…" } ], "alarmProgram": [ { "file": "../regulation.js", "line": 7, "excerpt": " alarmProgram:programRule('Alarm secretion trigger')," }, { "file": "../regulation.js", "line": 21, "excerpt": " alarmProgram:(g.alarmProduction||0)>0?3:0," }, { "file": "../signals.js", "line": 49, "excerpt": " const regulatorCost=.000004*[\"lightProgram\",\"organicProgram\",\"alarmProgram\",\"socialProgram\"].reduce((sum,key)=>sum+(g[key]>0?1:0),0);const upkeep=dt*(.000018*metabo…" } ], "alarmReception": [ { "file": "../model.js", "line": 127, "excerpt": "…oryResistance','detoxification','organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'];" }, { "file": "../chemistry.js", "line": 48, "excerpt": "…rn CUE_COMPOUNDS.includes(compound)?g[receptionLocus(compound)]||0:compound?Math.max(0,(g.alarmReception||0)*COMPOUNDS[compound].affinity.alarm):0}" }, { "file": "../compounds.js", "line": 13, "excerpt": "…response:'organicResponse'}),alarm:Object.freeze({production:'alarmProduction',reception:'alarmReception',response:'alarmResponse'}),social:Object.freeze({production:'socialProduction',reception…" }, { "file": "../compounds.js", "line": 22, "excerpt": " alarmProduction:sense*disturbance,alarmReception:sense*disturbance,alarmResponse:-.8," }, { "file": "../signals.js", "line": 48, "excerpt": " const apparatus=['organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'].reduce((sum,key)=>sum+(g[key]||0),0);" } ], "alarmResponse": [ { "file": "../compounds.js", "line": 13, "excerpt": "…}),alarm:Object.freeze({production:'alarmProduction',reception:'alarmReception',response:'alarmResponse'}),social:Object.freeze({production:'socialProduction',reception:'socialReception',respon…" }, { "file": "../compounds.js", "line": 22, "excerpt": " alarmProduction:sense*disturbance,alarmReception:sense*disturbance,alarmResponse:-.8," } ], "ambientSense": [ { "file": "../model.js", "line": 42, "excerpt": " ambientSense:{min:0,max:1,default:0,unit:'light investment',category:'sensing',role:'Ambient lamp sens…" }, { "file": "../model.js", "line": 127, "excerpt": "const massGenes=['bodySize','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis…" }, { "file": "../grazer.js", "line": 15, "excerpt": "…ythmStrength??0)>=.08&&(genes.twilightPreference??0)<=.6&&(phase<.25||phase>=.75)&&(genes.ambientSense??0)>0,light=member.bio?.ambientLamp??environment.light;return grazerSenseRange(member.gen…" }, { "file": "../population.js", "line": 53, "excerpt": "…||genome.version===1&&['rhythmPhase','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','…" }, { "file": "../population.js", "line": 150, "excerpt": "…0;i<3;i++){const source=sources[group],genes={...source.genome.genes};if(group===3){genes.ambientSense=0;genes.lightPreference=.5;genes.lightTolerance=1}const member=add(ALGA_FAMILY,.34+group*…" }, { "file": "../population.js", "line": 325, "excerpt": "…timum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambientSense'];" }, { "file": "../signals.js", "line": 30, "excerpt": " b.localLamp=lamp;if((g.ambientSense??0)>0&&old!==null){const change=lamp-old;b.ambientChange=clamp(change,-100,100)}else b.am…" }, { "file": "../signals.js", "line": 34, "excerpt": " const sensed=(g.ambientSense??0)*(g.entrainment??0),change=previousLamp===null?0:b.localLamp-previousLamp;" }, { "file": "../signals.js", "line": 42, "excerpt": " const photoAllowed=member.genome.locomotionFamily!==ALGA_FAMILY||(g.ambientSense??0)<=0||b.ambientLamp<=(g.photoGlowThreshold??.18)*100;" }, { "file": "../signals.js", "line": 49, "excerpt": "…key)=>sum+(g[key]>0?1:0),0);const upkeep=dt*(.000018*metabolicActivityFactor(b.drive)*((g.ambientSense??0)+(g.directionalSense??0)+(g.chemicalSense??0)+(g.disturbanceSense??0)+(g.emissionCapac…" }, { "file": "../perception.js", "line": 32, "excerpt": " if(b&&(member.genome.genes.ambientSense??0)>0)observations.push(cue('ambient',now,b.localLamp,'percent',{modality:'ambient recept…" }, { "file": "../light-preference.js", "line": 4, "excerpt": "…lightPreference===undefined||(genome?.genes?.lightTolerance??1)>=1?0:clamp(genome?.genes?.ambientSense??0,0,1)});" } ], "biomassDensity": [ { "file": "../model.js", "line": 65, "excerpt": " biomassDensity:{min:.6,max:1.6,default:1,unit:'relative mineral mass',category:'body',role:'Mass packed …" }, { "file": "../model.js", "line": 127, "excerpt": "const massGenes=['bodySize','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense'…" }, { "file": "../model.js", "line": 130, "excerpt": "…t+=g[massGenes[i]]??0;const value=g.bodySize**3*(genome.locomotionFamily===ALGA_FAMILY?(g.biomassDensity??1)*(1+.1*(g.storageInvestment??0)):1)*(1+.035*sensorCost);massCache.set(genome,{family:g…" }, { "file": "../model.js", "line": 136, "excerpt": " if(!(g.bodySize>=1.4&&g.biomassDensity<.75))return 0;" }, { "file": "../model.js", "line": 167, "excerpt": "…000025*g.flocking+.00002*g.crossAffinity+.00003*(g.fusionCapacity||0)+.00003*Math.max(0,g.biomassDensity-1)+.00003*Math.max(0,g.divisionTempo-1)+.000025*Math.max(0,g.foodEnergy-1)+.000045*g.stor…" }, { "file": "../model.js", "line": 174, "excerpt": "…'nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvestment']," }, { "file": "../population.js", "line": 53, "excerpt": "…nce','detoxification'].includes(key)||genome.locomotionFamily===ALGA_FAMILY&&['adhesion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mo…" }, { "file": "../appearance.js", "line": 87, "excerpt": " if(genes.bodySize>=1.4&&genes.biomassDensity<.75)return looks.noctiluca;" }, { "file": "../appearance.js", "line": 90, "excerpt": " if(genes.biomassDensity>=1.5&&genes.bodySize<1)return looks.diatom;" }, { "file": "../appearance.js", "line": 96, "excerpt": " if((genes.biomassDensity||1)>=1.4)return looks.iron;" } ], "bodySize": [ { "file": "../model.js", "line": 63, "excerpt": " bodySize:{min:.7,max:1.5,default:1,unit:'relative radius',category:'body',role:'Target mature body…" }, { "file": "../model.js", "line": 92, "excerpt": " bodySize:GENE_RULES.bodySize," }, { "file": "../model.js", "line": 92, "excerpt": " bodySize:GENE_RULES.bodySize," }, { "file": "../model.js", "line": 109, "excerpt": "export const PROTOTYPE_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsi…" }, { "file": "../model.js", "line": 109, "excerpt": "export const PROTOTYPE_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold…" }, { "file": "../model.js", "line": 110, "excerpt": "export const DRIFTER_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,buoyancy:{min:-1,max:1,default…" }, { "file": "../model.js", "line": 110, "excerpt": "export const DRIFTER_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,buoyancy:{min:-1,max:1,default:0,unit:'vertical bi…" }, { "file": "../model.js", "line": 111, "excerpt": "export const ATTACHED_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.s…" }, { "file": "../model.js", "line": 111, "excerpt": "export const ATTACHED_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.slowdownThreshold,con…" }, { "file": "../model.js", "line": 127, "excerpt": "const massGenes=['bodySize','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','…" }, { "file": "../model.js", "line": 130, "excerpt": "…sorCost=0;for(let i=3;igenome?.locomotionFamily===CRAWLER_FAMILY&&(genome.genes?.bodySize||1)<.9&&(genome.genes?.propulsion||0)>=.65;" }, { "file": "../model.js", "line": 136, "excerpt": " if(!(g.bodySize>=1.4&&g.biomassDensity<.75))return 0;" }, { "file": "../model.js", "line": 137, "excerpt": " if((g.fusionCapacity||0)>=.8&&(g.emissionCapacity||0)>=.8&&((g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bodySize>=1.2&&(g.emissionBand||0)>.25&&(g.emissionBan…" }, { "file": "../model.js", "line": 137, "excerpt": "…ity||0)>=.8&&(g.emissionCapacity||0)>=.8&&((g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bodySize>=1.2&&(g.emissionBand||0)>.25&&(g.emissionBand||0)<.4)))return 0;" }, { "file": "../model.js", "line": 158, "excerpt": "…mily===FLAGELLATE_FAMILY?.052:normalized.locomotionFamily===CARNIVORE_FAMILY?.047:.031)*g.bodySize,thrust:(normalized.locomotionFamily===OMNIVORE_FAMILY?.000009:normalized.locomotionFamily…" }, { "file": "../model.js", "line": 158, "excerpt": "…,vacuoleCapacity:normalized.locomotionFamily===OMNIVORE_FAMILY?Math.min(6,2.2*g.storage*g.bodySize**3):normalized.locomotionFamily===OPENWATER_FAMILY?8:normalized.locomotionFamily===APEX_F…" }, { "file": "../model.js", "line": 158, "excerpt": "…==OPENWATER_FAMILY?8:normalized.locomotionFamily===APEX_FAMILY?Math.min(8,2.8*g.storage*g.bodySize**3):normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?Math.min(8,2.4*g.storage*g.bodySize…" }, { "file": "../model.js", "line": 158, "excerpt": "…bodySize**3):normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?Math.min(8,2.4*g.storage*g.bodySize**3):(normalized.locomotionFamily===CARNIVORE_FAMILY?2.1:1.45)*g.storage*g.bodySize**3,pro…" }, { "file": "../model.js", "line": 158, "excerpt": "…rage*g.bodySize**3):(normalized.locomotionFamily===CARNIVORE_FAMILY?2.1:1.45)*g.storage*g.bodySize**3,processingRate:(normalized.locomotionFamily===OPENWATER_FAMILY?.000018:normalized.loco…" }, { "file": "../model.js", "line": 158, "excerpt": "…_HUNTER_FAMILY?.00002:.000012)*g.processing*g.metabolicPace,maintenance:(.00014+.000052*g.bodySize**2+.000025*g.sensingRange+.000025*g.feedingAperture+.000018*g.storage+.000025*g.flocking+…" }, { "file": "../model.js", "line": 159, "excerpt": " if(normalized.locomotionFamily!==ALGA_FAMILY)return {radius:.029*g.bodySize,thrust:.00000015*(g.propulsion??g.contractility??0),headingMemory:.3+3.7*(g.turnPersisten…" }, { "file": "../model.js", "line": 159, "excerpt": "…ry:.3+3.7*(g.turnPersistence??.5),optimum:g.thermalOptimum,maintenance:(.000055+.000035*g.bodySize**2+.00002*(g.sporeInvestment||0))*g.metabolicPace,activeCost:.00010*(g.propulsion??g.cont…" }, { "file": "../model.js", "line": 161, "excerpt": " radius:.029*g.bodySize," }, { "file": "../model.js", "line": 167, "excerpt": " maintenance:(.000105+.000055*g.bodySize**2+.000045*g.photosyntheticInvestment+.000035*g.nutrientUptake+.00004*g.adhesion+.000025*…" }, { "file": "../model.js", "line": 173, "excerpt": " consumer:['bodySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storag…" }, { "file": "../model.js", "line": 174, "excerpt": " alga:['bodySize','propulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptak…" }, { "file": "../model.js", "line": 175, "excerpt": " prototype:['bodySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeIn…" }, { "file": "../physical.js", "line": 16, "excerpt": " const genome=member.genome,size=genome?.genes?.bodySize,bounds=genome&&geneRules(genome)?.bodySize,rule=Number.isFinite(size)&&bounds&&size>=boun…" }, { "file": "../physical.js", "line": 16, "excerpt": "…const genome=member.genome,size=genome?.genes?.bodySize,bounds=genome&&geneRules(genome)?.bodySize,rule=Number.isFinite(size)&&bounds&&size>=bounds.min&&size<=bounds.max?familyRadius[genom…" }, { "file": "../signals.js", "line": 12, "excerpt": "… function pulseInterval(member){const g=member.genome.genes,band=g.emissionBand??0,size=g.bodySize??1;return Math.round((4400+band*7700+size*850)*(.9+idFraction(member.id,29)*.2))}" }, { "file": "../locomotion.js", "line": 31, "excerpt": " if(family===CRAWLER_FAMILY&&member.genome.genes.bodySize>=1.2&&member.genome.genes.turnPersistence>=.9&&!nearest){const old=m.trail.slice(0,-3);co…" }, { "file": "../locomotion.js", "line": 32, "excerpt": " if(family===CRAWLER_FAMILY&&member.genome.genes.bodySize<.77&&member.genome.genes.turnPersistence<.3&&member.energy<35){let sumX=0,sumY=0,count=0;…" }, { "file": "../locomotion.js", "line": 32, "excerpt": "…ng){if(other===member||other.genome.locomotionFamily!==CRAWLER_FAMILY||other.genome.genes.bodySize>=.77)continue;const distance=Math.hypot(other.cell.x-c.x,other.cell.y-c.y);if(distance>.0…" }, { "file": "../appearance.js", "line": 76, "excerpt": " if(genes.bodySize>=1.45&&(genes.emissionBand||0)<.2)return looks.saillantern;" }, { "file": "../appearance.js", "line": 77, "excerpt": " if(genes.bodySize<=.71&&(genes.emissionBand||0)>.4&&(genes.emissionBand||0)<.6)return looks.pinlight;" }, { "file": "../appearance.js", "line": 78, "excerpt": " if(genes.bodySize>=1.2&&(genes.emissionBand||0)>.25&&(genes.emissionBand||0)<.4)return looks.mintbell;" }, { "file": "../appearance.js", "line": 79, "excerpt": " if(genes.bodySize<=.76&&(genes.emissionBand||0)>.85)return looks.needlestar;" }, { "file": "../appearance.js", "line": 87, "excerpt": " if(genes.bodySize>=1.4&&genes.biomassDensity<.75)return looks.noctiluca;" }, { "file": "../appearance.js", "line": 89, "excerpt": " if(genes.adhesion>=.8&&genes.bodySize>=1.4)return looks.kelp;" }, { "file": "../appearance.js", "line": 90, "excerpt": " if(genes.biomassDensity>=1.5&&genes.bodySize<1)return looks.diatom;" }, { "file": "../appearance.js", "line": 94, "excerpt": " if((genes.divisionTempo||1)>=1.7&&(genes.bodySize||1)<.77)return looks.spark;" }, { "file": "../appearance.js", "line": 97, "excerpt": " if((genes.bodySize||1)>1.24&&(genes.photosyntheticInvestment||0)>.8)return looks.veil;" }, { "file": "../appearance.js", "line": 98, "excerpt": " if((genes.bodySize||1)<.79&&(genes.propulsion||0)>.67)return looks.dart;" }, { "file": "../appearance.js", "line": 99, "excerpt": " if((genes.bodySize||1)<.77&&(genes.photosyntheticInvestment||0)>=.8)return looks.bloom;" }, { "file": "../appearance.js", "line": 104, "excerpt": "…urn (genes.rhythmStrength||0)>.75&&(genes.directionalSense||0)>.8?looks.gloammouth:(genes.bodySize||1)<1?looks.fleckmouth:looks.mosaicmouth;" }, { "file": "../appearance.js", "line": 106, "excerpt": " if(family===FLOOR_HUNTER_FAMILY)return genes.bodySize>=1.45&&genes.propulsion<.55?looks.amoeba_proteus:looks.siltfang;" }, { "file": "../appearance.js", "line": 108, "excerpt": "…eturn (genes.emissionCapacity||0)>.85&&(genes.rhythmStrength||0)>.85?looks.lurejaw:(genes.bodySize||1)>=1.3?looks.broadmouth:looks.raptor;" }, { "file": "../appearance.js", "line": 115, "excerpt": " if((genes.bodySize||1)<.86&&(genes.sensingRange||0)>=1.2)return looks.patient_ciliate;" }, { "file": "../appearance.js", "line": 122, "excerpt": " if((genes.bodySize||1)<.86)return looks.lean_flagellate;" }, { "file": "../appearance.js", "line": 127, "excerpt": " if(genes.bodySize>=1.4&&genes.turnPersistence<.3)return looks.fuligo;" }, { "file": "../appearance.js", "line": 128, "excerpt": " if(genes.bodySize>=1.2&&genes.turnPersistence>=.9)return looks.physarum;" }, { "file": "../appearance.js", "line": 129, "excerpt": " if(genes.bodySize<.77&&genes.turnPersistence<.3)return looks.dicty;" }, { "file": "../appearance.js", "line": 130, "excerpt": " if((genes.bodySize||1)>=1.28)return looks.mound;" }, { "file": "../appearance.js", "line": 131, "excerpt": " if((genes.bodySize||1)>=1.05)return looks.silt;" }, { "file": "../appearance.js", "line": 132, "excerpt": " if((genes.bodySize||1)<.77&&(genes.propulsion||0)>.9)return looks.ash;" } ], "buoyancy": [ { "file": "../model.js", "line": 110, "excerpt": "…_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,buoyancy:{min:-1,max:1,default:0,unit:'vertical bias',category:'locomotion',role:'Passive settling…" }, { "file": "../population.js", "line": 242, "excerpt": "…d}`;member.genome=normalizeGenome({locomotionFamily:family,genes:family===DRIFTER_FAMILY?{buoyancy:0}:{}});member.biomass=matureMass(member.genome)*.7;member.energy=family===GRAZER_FAMILY?…" }, { "file": "../population.js", "line": 281, "excerpt": "…l==='current'){drifter.cell.x=.5;drifter.cell.y=.5;drifter.cell.z=.6;drifter.genome.genes.buoyancy=.8;p.records.find(record=>record.id===drifter.id).genome=copy(drifter.genome)}" }, { "file": "../population.js", "line": 579, "excerpt": "…,rules=geneRules(result);for(const gene of ['metabolicPace','propulsion','contractility','buoyancy','slowdownThreshold']){if(!(gene in rules))continue;const old=result.genes[gene];if(!['me…" }, { "file": "../population.js", "line": 579, "excerpt": "…eshold']){if(!(gene in rules))continue;const old=result.genes[gene];if(!['metabolicPace','buoyancy','slowdownThreshold'].includes(gene)&&old<=0)continue;const range=gene==='metabolicPace'?…" }, { "file": "../population.js", "line": 579, "excerpt": "…hreshold'].includes(gene)&&old<=0)continue;const range=gene==='metabolicPace'?.04:gene==='buoyancy'?.04:gene==='slowdownThreshold'?7:.08,next=clamp(old+(['buoyancy','slowdownThreshold'].in…" }, { "file": "../population.js", "line": 579, "excerpt": "…tabolicPace'?.04:gene==='buoyancy'?.04:gene==='slowdownThreshold'?7:.08,next=clamp(old+(['buoyancy','slowdownThreshold'].includes(gene)?(random(pop)*2-1)*range:old*(random(pop)*2-1)*range)…" }, { "file": "../locomotion.js", "line": 28, "excerpt": "…0032+current.y*.0000003)*dt/scale);c.vz=c.vz*.72+((.5-c.z)*.000000002-member.genome.genes.buoyancy*.000000012)*dt/scale;c.x+=c.vx*dt;c.y+=c.vy*dt;c.z=clamp(c.z+c.vz*dt,0,1);m.active={x:0,y…" } ], "cannibalism": [ { "file": "../model.js", "line": 108, "excerpt": "export const HUNTER_GENE_RULES=Object.freeze({...GRAZER_GENE_RULES,cannibalism:{min:0,max:1,default:0,unit:'prey recognition',category:'feeding',role:'Same-family prey …" }, { "file": "../model.js", "line": 158, "excerpt": "…*g.sensingRange+.000025*g.feedingAperture+.000018*g.storage+.000025*g.flocking+.000025*(g.cannibalism||0)+.00002*(g.acquisitionCapacity||0)+.000025*Math.max(0,g.divisionTempo-1)+(normalized.l…" }, { "file": "../model.js", "line": 173, "excerpt": "…imum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','divisionTempo']," }, { "file": "../grazer.js", "line": 29, "excerpt": "…amily===preyFamily&&[APEX_FAMILY,OPENWATER_FAMILY].includes(family)&&(grazer.genome.genes.cannibalism||0)>=CANNIBALISM_THRESHOLD;" }, { "file": "../population.js", "line": 53, "excerpt": "…des(key)||['flocking','divisionTempo','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestmen…" }, { "file": "../appearance.js", "line": 105, "excerpt": " if(family===OPENWATER_FAMILY)return (genes.cannibalism||0)>=.55?looks.splitjaw:looks.widejaw;" }, { "file": "../appearance.js", "line": 107, "excerpt": " if(family===APEX_FAMILY)return (genes.cannibalism||0)>=.55?looks.kinmaw:looks.apex;" } ], "chemicalSense": [ { "file": "../model.js", "line": 48, "excerpt": " chemicalSense:{min:0,max:1,default:0,unit:'mineral receptor investment',category:'sensing',role:'Dissol…" }, { "file": "../model.js", "line": 127, "excerpt": "…Genes=['bodySize','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResist…" }, { "file": "../model.js", "line": 252, "excerpt": " ctl.strength=ctl.enabled?Math.min(.45,norm*.16*(1+.5*(state.organism.genome.genes.chemicalSense??0))):0;ctl.headingTarget=Math.atan2(gy,gx);ctl.verticalTarget=norm>0?limit(gz/norm,-1,1)…" }, { "file": "../population.js", "line": 53, "excerpt": "…','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','emissionBand'].includes(key)||['f…" }, { "file": "../population.js", "line": 325, "excerpt": "const ACQUIRABLE_LOCI=['thermalOptimum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambientSense'];" }, { "file": "../compounds.js", "line": 19, "excerpt": " const g=genome?.genes||{},sense=g.chemicalSense??0,disturbance=g.disturbanceSense??0;" }, { "file": "../signals.js", "line": 27, "excerpt": "…);b.ambientLamp=lamp;b.disturbance=0;b.disturbanceBearing=null;const chemicalInvestment=g.chemicalSense??0;b.chemical=chemicalInvestment?sampleNutrient(member.cell,environment.nutrientField,fie…" }, { "file": "../signals.js", "line": 49, "excerpt": "…(.000018*metabolicActivityFactor(b.drive)*((g.ambientSense??0)+(g.directionalSense??0)+(g.chemicalSense??0)+(g.disturbanceSense??0)+(g.emissionCapacity??0)+apparatus*.35)+regulatorCost);" }, { "file": "../perception.js", "line": 4, "excerpt": "…ect.freeze({nutrient:{version:1,unit:'local mineral units',status:'implemented',receptor:'chemicalSense',source:'signals.observeSignal paired XY probes',gradient:'thresholded bearing',history:'…" }, { "file": "../perception.js", "line": 4, "excerpt": "…ck',render:'uncertain sector',read(member,now){const b=member.bio;if((member.genome.genes.chemicalSense??0)<=0||!b||b.chemicalBearing==null)return null;return cue('chemical',now,b.chemical,'loc…" } ], "coatInvestment": [ { "file": "../model.js", "line": 79, "excerpt": " coatInvestment:{min:0,max:1,default:0,unit:'covering investment',category:'defense',role:'Constructed mi…" }, { "file": "../model.js", "line": 143, "excerpt": " if((g.coatInvestment||0)>=.5)return 0;" }, { "file": "../model.js", "line": 167, "excerpt": "…00025*Math.max(0,g.foodEnergy-1)+.000045*g.storageInvestment+.000025*g.dormancy+.000065*g.coatInvestment)*g.metabolicPace," }, { "file": "../model.js", "line": 174, "excerpt": "…onCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvestment']," }, { "file": "../population.js", "line": 53, "excerpt": "…nergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatInvestment'].includes(key))&&genome.genes[key]===undefined||typeof genome.genes[key]==='number'&&Num…" }, { "file": "../population.js", "line": 57, "excerpt": "…ty=genome=>genome.locomotionFamily===ALGA_FAMILY?.26*structuralMass(genome)*(genome.genes.coatInvestment??0):0;" }, { "file": "../population.js", "line": 545, "excerpt": "…red=Math.min(coatCapacity(member.genome)-(member.coat||0),.000004*dt*(member.genome.genes.coatInvestment??0),(member.energy-35)/8);if(desired>0){const built=withdrawNutrient(member.cell,state.en…" }, { "file": "../appearance.js", "line": 86, "excerpt": " if((genes.coatInvestment||0)>=.5)return looks.glasscoat;" } ], "contractility": [ { "file": "../model.js", "line": 111, "excerpt": "…ize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.slowdownThreshold,contractility:{min:0,max:1,default:.6,unit:'stalk effort',category:'locomotion',role:'Contraction capac…" }, { "file": "../model.js", "line": 159, "excerpt": "…tionFamily!==ALGA_FAMILY)return {radius:.029*g.bodySize,thrust:.00000015*(g.propulsion??g.contractility??0),headingMemory:.3+3.7*(g.turnPersistence??.5),optimum:g.thermalOptimum,maintenance:(.0…" }, { "file": "../model.js", "line": 159, "excerpt": "…Size**2+.00002*(g.sporeInvestment||0))*g.metabolicPace,activeCost:.00010*(g.propulsion??g.contractility??0)};" }, { "file": "../model.js", "line": 175, "excerpt": " prototype:['bodySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeInvestment']" }, { "file": "../population.js", "line": 366, "excerpt": " else if(family===ATTACHED_FAMILY&&member.genome.genes.contractility>=.95){const eaten=withdrawDetritus(state,member.cell,.000015*dt);resource='detritus';gros…" }, { "file": "../population.js", "line": 539, "excerpt": "…==CRAWLER_FAMILY&&!(member.genome.locomotionFamily===ATTACHED_FAMILY&&member.genome.genes.contractility>=.95);accountEnergy(state,photo?'prototype photosynthesis':'organic construction',{light:…" }, { "file": "../population.js", "line": 579, "excerpt": "…ome)),changes=[],rules=geneRules(result);for(const gene of ['metabolicPace','propulsion','contractility','buoyancy','slowdownThreshold']){if(!(gene in rules))continue;const old=result.genes[gen…" }, { "file": "../locomotion.js", "line": 29, "excerpt": "…Math.hypot(other.cell.x-c.x,other.cell.y-c.y)<.095/scale&&Math.abs(other.cell.z-c.z)<.15),contractility=member.genome.genes.contractility;if(near&&now>=m.until){m.mode='contract';m.until=now+50…" }, { "file": "../locomotion.js", "line": 29, "excerpt": "…cell.y-c.y)<.095/scale&&Math.abs(other.cell.z-c.z)<.15),contractility=member.genome.genes.contractility;if(near&&now>=m.until){m.mode='contract';m.until=now+500}if(now>=m.until&&m.mode==='contr…" }, { "file": "../locomotion.js", "line": 29, "excerpt": "…ver';m.extension=clamp((m.extension??0)+(m.mode==='contract'?-1:1)*dt*fuelFactor/(900-500*contractility),0,1);c.x=a.x;c.y=a.y;c.z=a.z-Math.min(.13/scale,(.04+.08*m.extension)/scale);c.vx=c.vy=c…" }, { "file": "../appearance.js", "line": 137, "excerpt": " if(family===ATTACHED_FAMILY)return genes.contractility>=.95?looks.vorticella:looks.attached;" } ], "crossAffinity": [ { "file": "../model.js", "line": 69, "excerpt": " crossAffinity:{min:0,max:1,default:0,unit:'contact compatibility',category:'reproduction',role:'Ability…" }, { "file": "../model.js", "line": 167, "excerpt": "…yntheticInvestment+.000035*g.nutrientUptake+.00004*g.adhesion+.000025*g.flocking+.00002*g.crossAffinity+.00003*(g.fusionCapacity||0)+.00003*Math.max(0,g.biomassDensity-1)+.00003*Math.max(0,g.di…" }, { "file": "../model.js", "line": 174, "excerpt": "…heticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dorm…" }, { "file": "../population.js", "line": 53, "excerpt": "…ocomotionFamily===ALGA_FAMILY&&['adhesion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatInvestment'].incl…" }, { "file": "../population.js", "line": 409, "excerpt": " const ready=alga&&(genes.crossAffinity??0)>=.5&&now-member.birthAt>=30000&&member.energy>=50&&!member.crossPending;" }, { "file": "../population.js", "line": 511, "excerpt": "…===ALGA_FAMILY&&(!member.dormancy||member.dormancy.mode==='active')&&(member.genome.genes.crossAffinity||0)>=.5&&!member.crossPending&&!feeding.has(member.id)&&now-member.birthAt>=30000&&member…" }, { "file": "../population.js", "line": 512, "excerpt": "…d===b.lineageId)continue;const distinct=Object.keys(geneRules(a.genome)).some(key=>key!=='crossAffinity'&&(a.genome.genes[key]??geneRules(a.genome)[key].default)!==(b.genome.genes[key]??geneRul…" }, { "file": "../compounds.js", "line": 23, "excerpt": " socialProduction:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialResponse:.45" }, { "file": "../compounds.js", "line": 23, "excerpt": "…Math.max(g.flocking??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialResponse:.45" }, { "file": "../propagules.js", "line": 11, "excerpt": "…nome.genes;if(member.genome.locomotionFamily===ALGA_FAMILY&&(g.fusionCapacity??0)>=.7&&(g.crossAffinity??0)>=.5)return 'gamete';if(member.genome.locomotionFamily===CRAWLER_FAMILY&&(g.sporeInves…" } ], "debrisMetabolism": [ { "file": "../model.js", "line": 68, "excerpt": " debrisMetabolism:{min:0,max:1,default:0,unit:'pathway expression',category:'metabolism',role:'Suspended de…" }, { "file": "../model.js", "line": 132, "excerpt": "…const usesDebrisMetabolism=genome=>genome?.locomotionFamily===ALGA_FAMILY&&(genome.genes?.debrisMetabolism??0)>=.5;" }, { "file": "../model.js", "line": 152, "excerpt": "…hreshold'&&input.version<4&&input.genes?.[key]===undefined)continue;const fallback=key==='debrisMetabolism'&&input.version===2&&input.genes?.[key]===undefined?legacyDebrisPathway(input.genes||{}):…" }, { "file": "../population.js", "line": 53, "excerpt": "…fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistanc…" }, { "file": "../population.js", "line": 623, "excerpt": "…opulation.living){if(member.genome?.locomotionFamily===ALGA_FAMILY&&member.genome?.genes?.debrisMetabolism===undefined){const record=next.population.records.find(item=>item.id===member.id);if(reco…" }, { "file": "../population.js", "line": 623, "excerpt": "…=next.population.records.find(item=>item.id===member.id);if(record&&record.genome?.genes?.debrisMetabolism===undefined){record.legacyGenome=copy(record.genome);record.genome=upgradeCompoundGenome(…" }, { "file": "../population.js", "line": 623, "excerpt": "…r.crossPending?.genome?.locomotionFamily===ALGA_FAMILY&&member.crossPending.genome.genes?.debrisMetabolism===undefined)member.crossPending.genome=normalizeGenome(member.crossPending.genome)}for(co…" }, { "file": "../population.js", "line": 623, "excerpt": "…aguleMedium?.units||[])if(unit.genome?.locomotionFamily===ALGA_FAMILY&&unit.genome.genes?.debrisMetabolism===undefined)unit.genome=normalizeGenome(unit.genome);next.population.supportLifespanMs??=…" } ], "detoxification": [ { "file": "../model.js", "line": 56, "excerpt": " detoxification:{min:0,max:1,default:0,unit:'clearance investment',category:'chemical defense',role:'Toxi…" }, { "file": "../model.js", "line": 127, "excerpt": "…ionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxification','organicProduction','organicReception','alarmProduction','alarmReception','socialProduct…" }, { "file": "../population.js", "line": 53, "excerpt": "…oxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistance','detoxification'].includes(key)||genome.locomotionFamily===ALGA_FAMILY&&['adhesion','biomassDensity','div…" }, { "file": "../toxicology.js", "line": 20, "excerpt": "…ynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0)),paid=Math.min(member.energy,upkeep);member.energy-=paid;" }, { "file": "../toxicology.js", "line": 23, "excerpt": "…(const kind of kinds){const resistance=clamp(g[`${kind}Resistance`]||0,0,1),detox=clamp(g.detoxification||0,0,1),concentration=local?.[`toxin-${kind}`]||0;concentrations[kind]=concentration;cons…" }, { "file": "../toxicology.js", "line": 24, "excerpt": "…ynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0));const paid=Math.min(member.energy,cost);member.energy-=paid;return {cost:paid,concen…" } ], "directionalSense": [ { "file": "../model.js", "line": 45, "excerpt": " directionalSense:{min:0,max:1,default:0,unit:'receptor investment',category:'sensing',role:'Biological lig…" }, { "file": "../model.js", "line": 127, "excerpt": "const massGenes=['bodySize','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistan…" }, { "file": "../regulation.js", "line": 19, "excerpt": " return {lightProgram:capacity<=0?0:alga&&capacity>.9?7:(g.directionalSense||0)>.6&&(g.disturbanceSense||0)>.65?8:(g.directionalSense||0)>.6&&capacity>.5?5:(g.distur…" }, { "file": "../regulation.js", "line": 19, "excerpt": "…ity<=0?0:alga&&capacity>.9?7:(g.directionalSense||0)>.6&&(g.disturbanceSense||0)>.65?8:(g.directionalSense||0)>.6&&capacity>.5?5:(g.disturbanceSense||0)>.65?3:2," }, { "file": "../population.js", "line": 53, "excerpt": "…th','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','…" }, { "file": "../signals.js", "line": 26, "excerpt": "…wer||0,distance=null){const sg=source.genome.genes,rg=receiver.genome.genes,investment=rg.directionalSense??0;if(investment<=0||power<=0)return 0;const d=distance??Math.hypot(source.cell.x-receive…" }, { "file": "../signals.js", "line": 49, "excerpt": "…1:0),0);const upkeep=dt*(.000018*metabolicActivityFactor(b.drive)*((g.ambientSense??0)+(g.directionalSense??0)+(g.chemicalSense??0)+(g.disturbanceSense??0)+(g.emissionCapacity??0)+apparatus*.35)+r…" }, { "file": "../appearance.js", "line": 104, "excerpt": " if(family===OMNIVORE_FAMILY)return (genes.rhythmStrength||0)>.75&&(genes.directionalSense||0)>.8?looks.gloammouth:(genes.bodySize||1)<1?looks.fleckmouth:looks.mosaicmouth;" }, { "file": "../appearance.js", "line": 112, "excerpt": " if((genes.rhythmStrength||0)>.9&&(genes.directionalSense||0)>.9)return looks.nightglass;" }, { "file": "../appearance.js", "line": 120, "excerpt": " if((genes.rhythmStrength||0)>.8&&(genes.directionalSense||0)>.85)return looks.dusktail;" } ], "disturbanceSense": [ { "file": "../model.js", "line": 57, "excerpt": " disturbanceSense:{min:0,max:1,default:0,unit:'motion investment',category:'sensing',role:'Local motion and…" }, { "file": "../model.js", "line": 127, "excerpt": "…','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResis…" }, { "file": "../regulation.js", "line": 19, "excerpt": " return {lightProgram:capacity<=0?0:alga&&capacity>.9?7:(g.directionalSense||0)>.6&&(g.disturbanceSense||0)>.65?8:(g.directionalSense||0)>.6&&capacity>.5?5:(g.disturbanceSense||0)>.65?3:2," }, { "file": "../regulation.js", "line": 19, "excerpt": "…lSense||0)>.6&&(g.disturbanceSense||0)>.65?8:(g.directionalSense||0)>.6&&capacity>.5?5:(g.disturbanceSense||0)>.65?3:2," }, { "file": "../population.js", "line": 53, "excerpt": "…ce','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','emissionBand'].includes(key)||['flocking','divisionT…" }, { "file": "../population.js", "line": 325, "excerpt": "…LE_LOCI=['thermalOptimum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambientSense'];" }, { "file": "../compounds.js", "line": 19, "excerpt": " const g=genome?.genes||{},sense=g.chemicalSense??0,disturbance=g.disturbanceSense??0;" }, { "file": "../signals.js", "line": 28, "excerpt": " const disturbanceSense=g.disturbanceSense??0;for(const other of nearby){if(other===member)continue;const power=p…" }, { "file": "../signals.js", "line": 28, "excerpt": " const disturbanceSense=g.disturbanceSense??0;for(const other of nearby){if(other===member)continue;const power=pulseSnapshot?.get(o…" }, { "file": "../signals.js", "line": 28, "excerpt": "…ember)continue;const power=pulseSnapshot?.get(other.id)??other.bio?.power??0;if(power<=0&&disturbanceSense<=0)continue;const d=Math.hypot(other.cell.x-member.cell.x,other.cell.y-member.cell.y,(oth…" }, { "file": "../signals.js", "line": 28, "excerpt": "…r.cell.x),band:other.genome.genes.emissionBand??0,pulseUntil:other.bio?.pulseUntil||0}}if(disturbanceSense>0){const speed=Math.hypot(other.cell.vx||0,other.cell.vy||0,(other.cell.vz||0)*DEPTH_ASPE…" }, { "file": "../signals.js", "line": 28, "excerpt": "…ath.hypot(other.cell.vx||0,other.cell.vy||0,(other.cell.vz||0)*DEPTH_ASPECT),motion=clamp(disturbanceSense*speed*1100/(1+d*20),0,1);if(motion>b.disturbance){b.disturbance=motion;b.disturbanceBeari…" }, { "file": "../signals.js", "line": 49, "excerpt": "…ivityFactor(b.drive)*((g.ambientSense??0)+(g.directionalSense??0)+(g.chemicalSense??0)+(g.disturbanceSense??0)+(g.emissionCapacity??0)+apparatus*.35)+regulatorCost);" }, { "file": "../appearance.js", "line": 110, "excerpt": " if((genes.emissionCapacity||0)>.9&&(genes.disturbanceSense||0)>.8)return looks.murkflash;" } ], "divisionTempo": [ { "file": "../model.js", "line": 66, "excerpt": " divisionTempo:{min:.6,max:1.8,default:1,unit:'relative rate',category:'reproduction',role:'Growth and d…" }, { "file": "../model.js", "line": 94, "excerpt": " divisionTempo:GENE_RULES.divisionTempo," }, { "file": "../model.js", "line": 94, "excerpt": " divisionTempo:GENE_RULES.divisionTempo," }, { "file": "../model.js", "line": 158, "excerpt": "…locking+.000025*(g.cannibalism||0)+.00002*(g.acquisitionCapacity||0)+.000025*Math.max(0,g.divisionTempo-1)+(normalized.locomotionFamily===OMNIVORE_FAMILY?.00006:normalized.locomotionFamily===OP…" }, { "file": "../model.js", "line": 167, "excerpt": "…ty+.00003*(g.fusionCapacity||0)+.00003*Math.max(0,g.biomassDensity-1)+.00003*Math.max(0,g.divisionTempo-1)+.000025*Math.max(0,g.foodEnergy-1)+.000045*g.storageInvestment+.000025*g.dormancy+.000…" }, { "file": "../model.js", "line": 173, "excerpt": "…e','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','divisionTempo']," }, { "file": "../model.js", "line": 174, "excerpt": "…'thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvestment']," }, { "file": "../grazer.js", "line": 140, "excerpt": "…nome)*1.4,growth=member.energy>20?Math.min(processed*Math.min(.9,.68*(member.genome.genes.divisionTempo??1)),targetMass-member.biomass,(member.energy-20)/4):0;" }, { "file": "../population.js", "line": 39, "excerpt": "…member.genome.locomotionFamily===ALGA_FAMILY?DIVISION_AGE_MS:100000)/(member.genome.genes.divisionTempo??1);" }, { "file": "../population.js", "line": 53, "excerpt": "…anceSense','emissionCapacity','emissionPower','emissionBand'].includes(key)||['flocking','divisionTempo','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','f…" }, { "file": "../population.js", "line": 53, "excerpt": "…ion'].includes(key)||genome.locomotionFamily===ALGA_FAMILY&&['adhesion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dor…" }, { "file": "../population.js", "line": 545, "excerpt": "…s=1.7&&(genes.bodySize||1)<.77)return looks.spark;" } ], "dormancy": [ { "file": "../model.js", "line": 78, "excerpt": " dormancy:{min:0,max:1,default:0,unit:'cyst tendency',category:'survival',role:'Reversible cyst for…" }, { "file": "../model.js", "line": 142, "excerpt": " if((g.dormancy||0)>=.5&&(g.storageInvestment||0)>=.5)return 0;" }, { "file": "../model.js", "line": 167, "excerpt": "…divisionTempo-1)+.000025*Math.max(0,g.foodEnergy-1)+.000045*g.storageInvestment+.000025*g.dormancy+.000065*g.coatInvestment)*g.metabolicPace," }, { "file": "../model.js", "line": 174, "excerpt": "…nity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvestment']," }, { "file": "../population.js", "line": 49, "excerpt": "…Count=0;for(const member of p.living){const key=variantKey(member.genome),sleeping=member.dormancy?.mode&&member.dormancy.mode!=='active';variants[key]=(variants[key]||0)+1;const group=sle…" }, { "file": "../population.js", "line": 49, "excerpt": "…r of p.living){const key=variantKey(member.genome),sleeping=member.dormancy?.mode&&member.dormancy.mode!=='active';variants[key]=(variants[key]||0)+1;const group=sleeping?dormant:active;gr…" }, { "file": "../population.js", "line": 53, "excerpt": "…mpo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatInvestment'].includes(key))&&genome.genes[key]===undefined||typeof genome.genes[key…" }, { "file": "../population.js", "line": 167, "excerpt": "….noiseState=hash(member.id);member.motion=freshMotion(member,200);if((member.genome.genes.dormancy||0)>=.5)member.dormancy={mode:'active',since:0,poorMs:0,goodMs:0,activeMs:0};p.living.pus…" }, { "file": "../population.js", "line": 167, "excerpt": "…id);member.motion=freshMotion(member,200);if((member.genome.genes.dormancy||0)>=.5)member.dormancy={mode:'active',since:0,poorMs:0,goodMs:0,activeMs:0};p.living.push(member);p.records.push…" }, { "file": "../population.js", "line": 331, "excerpt": "…cy(state,member,dt){if(member.genome.locomotionFamily!==ALGA_FAMILY||(member.genome.genes.dormancy??0)<.5)return false;const d=member.dormancy??={mode:'active',since:state.elapsed,poorMs:0…" }, { "file": "../population.js", "line": 331, "excerpt": "…ionFamily!==ALGA_FAMILY||(member.genome.genes.dormancy??0)<.5)return false;const d=member.dormancy??={mode:'active',since:state.elapsed,poorMs:0,goodMs:0,activeMs:0},now=state.elapsed,ligh…" }, { "file": "../population.js", "line": 333, "excerpt": "…orMs=0;clearBonds(state,member.id);event(state,'adaptation',{organismId:member.id,module:'dormancy',from:'active',to:'entering',energyCost:3})}else d.blocked='Cyst entry needs 6 usable and…" }, { "file": "../population.js", "line": 334, "excerpt": "…e='dormant';d.since=now;d.goodMs=0;event(state,'adaptation',{organismId:member.id,module:'dormancy',from:'entering',to:'dormant'})}" }, { "file": "../population.js", "line": 335, "excerpt": "…erminating';d.since=now;d.goodMs=0;event(state,'adaptation',{organismId:member.id,module:'dormancy',from:'dormant',to:'germinating',energyCost:2,reserveCost:2})}else d.blocked='Recovery ne…" }, { "file": "../population.js", "line": 336, "excerpt": "…led: local light or mineral fell';}event(state,'adaptation',{organismId:member.id,module:'dormancy',from,to:d.mode,reason:d.blocked||'local conditions stable'})}" }, { "file": "../population.js", "line": 341, "excerpt": " if(parent.dormancy?.mode&&parent.dormancy.mode!=='active')return {ok:false,reason:'dormant'};" }, { "file": "../population.js", "line": 341, "excerpt": " if(parent.dormancy?.mode&&parent.dormancy.mode!=='active')return {ok:false,reason:'dormant'};" }, { "file": "../population.js", "line": 351, "excerpt": "…ate.elapsed);child.bio.phase=parent.bio?.phase??child.bio.phase;if((mutation.genome.genes.dormancy??0)>=.5)child.dormancy={mode:'active',since:state.elapsed,poorMs:0,goodMs:0,activeMs:0};c…" }, { "file": "../population.js", "line": 351, "excerpt": "…phase=parent.bio?.phase??child.bio.phase;if((mutation.genome.genes.dormancy??0)>=.5)child.dormancy={mode:'active',since:state.elapsed,poorMs:0,goodMs:0,activeMs:0};const excessCoat=Math.ma…" }, { "file": "../population.js", "line": 358, "excerpt": "…gote')member.zygote={until:state.elapsed+8000,stage:'recovering'};if((member.genome.genes.dormancy??0)>=.5)member.dormancy={mode:'active',since:state.elapsed,poorMs:0,goodMs:0,activeMs:0};…" }, { "file": "../population.js", "line": 358, "excerpt": "…il:state.elapsed+8000,stage:'recovering'};if((member.genome.genes.dormancy??0)>=.5)member.dormancy={mode:'active',since:state.elapsed,poorMs:0,goodMs:0,activeMs:0};p.living.push(member);p.…" }, { "file": "../population.js", "line": 359, "excerpt": "…te.elapsed-(member.propaguleLastAt||0)<30000||member.zygote?.stage==='recovering'||member.dormancy?.mode&&member.dormancy.mode!=='active')continue;const result=releasePropagule(medium,memb…" }, { "file": "../population.js", "line": 359, "excerpt": "…aguleLastAt||0)<30000||member.zygote?.stage==='recovering'||member.dormancy?.mode&&member.dormancy.mode!=='active')continue;const result=releasePropagule(medium,member,state.elapsed,mature…" }, { "file": "../population.js", "line": 411, "excerpt": " const permitted=member.dormancy?.mode!=='dormant'&&!member.zygote&&!member.grazer?.handling;" }, { "file": "../population.js", "line": 504, "excerpt": "const adhesion=m=>m.genome.locomotionFamily===ALGA_FAMILY&&(!m.dormancy||m.dormancy.mode==='active')?(m.genome.genes.adhesion||0):0;" }, { "file": "../population.js", "line": 504, "excerpt": "const adhesion=m=>m.genome.locomotionFamily===ALGA_FAMILY&&(!m.dormancy||m.dormancy.mode==='active')?(m.genome.genes.adhesion||0):0;" }, { "file": "../population.js", "line": 511, "excerpt": "…er=>member.id!==liftedCell(state)&&member.genome.locomotionFamily===ALGA_FAMILY&&(!member.dormancy||member.dormancy.mode==='active')&&(member.genome.genes.crossAffinity||0)>=.5&&!member.cr…" }, { "file": "../population.js", "line": 511, "excerpt": "…iftedCell(state)&&member.genome.locomotionFamily===ALGA_FAMILY&&(!member.dormancy||member.dormancy.mode==='active')&&(member.genome.genes.crossAffinity||0)>=.5&&!member.crossPending&&!feed…" }, { "file": "../population.js", "line": 540, "excerpt": "…(member.reserve||0),dormant=stepDormancy(state,member,dt);if(dormant)accountEnergy(state,'dormancy',{dissipated:Math.max(0,before-member.energy-(member.reserve||0))});return dormant})()){}" }, { "file": "../population.js", "line": 545, "excerpt": " const target=matureMass(member.genome)*DIVISION_MASS_RATIO,awake=!member.dormancy||member.dormancy.mode==='active';if(awake&&member.genome.locomotionFamily===ALGA_FAMILY&&…" }, { "file": "../population.js", "line": 545, "excerpt": "…const target=matureMass(member.genome)*DIVISION_MASS_RATIO,awake=!member.dormancy||member.dormancy.mode==='active';if(awake&&member.genome.locomotionFamily===ALGA_FAMILY&&member.energy>35&…" }, { "file": "../population.js", "line": 612, "excerpt": "…?0)+1e-8)||m.coat!==undefined&&(!positive(m.coat)||m.coat>coatCapacity(m.genome)+1e-8)||m.dormancy&&((m.genome.genes.dormancy??0)<.5||!['active','entering','dormant','germinating'].include…" }, { "file": "../population.js", "line": 612, "excerpt": "…ed&&(!positive(m.coat)||m.coat>coatCapacity(m.genome)+1e-8)||m.dormancy&&((m.genome.genes.dormancy??0)<.5||!['active','entering','dormant','germinating'].includes(m.dormancy.mode)||!positi…" }, { "file": "../population.js", "line": 612, "excerpt": "…m.genome.genes.dormancy??0)<.5||!['active','entering','dormant','germinating'].includes(m.dormancy.mode)||!positive(m.dormancy.since)||m.dormancy.since>raw.elapsed||!positive(m.dormancy.po…" }, { "file": "../population.js", "line": 612, "excerpt": "….5||!['active','entering','dormant','germinating'].includes(m.dormancy.mode)||!positive(m.dormancy.since)||m.dormancy.since>raw.elapsed||!positive(m.dormancy.poorMs)||!positive(m.dormancy.…" }, { "file": "../population.js", "line": 612, "excerpt": "…ering','dormant','germinating'].includes(m.dormancy.mode)||!positive(m.dormancy.since)||m.dormancy.since>raw.elapsed||!positive(m.dormancy.poorMs)||!positive(m.dormancy.goodMs)||!positive(…" }, { "file": "../population.js", "line": 612, "excerpt": "…(m.dormancy.mode)||!positive(m.dormancy.since)||m.dormancy.since>raw.elapsed||!positive(m.dormancy.poorMs)||!positive(m.dormancy.goodMs)||!positive(m.dormancy.activeMs)))throw Error('Inval…" }, { "file": "../population.js", "line": 612, "excerpt": "….dormancy.since)||m.dormancy.since>raw.elapsed||!positive(m.dormancy.poorMs)||!positive(m.dormancy.goodMs)||!positive(m.dormancy.activeMs)))throw Error('Invalid survival state');if(m.intro…" }, { "file": "../population.js", "line": 612, "excerpt": "…ince>raw.elapsed||!positive(m.dormancy.poorMs)||!positive(m.dormancy.goodMs)||!positive(m.dormancy.activeMs)))throw Error('Invalid survival state');if(m.introducedFrom&&(typeof m.introduce…" }, { "file": "../signals.js", "line": 43, "excerpt": " const eligible=member.dormancy?.mode!=='dormant'&&!member.zygote&&!(member.grazer?.handling)&&photoAllowed&&member.energ…" }, { "file": "../signals.js", "line": 45, "excerpt": " if(!eligible){b.pulseUntil=now;decision.state.reason=member.dormancy?.mode==='dormant'?'dormant':'physiology suppressed'}" }, { "file": "../propagules.js", "line": 15, "excerpt": "…yNeed}`);if(member.zygote?.stage==='recovering')reasons.push('zygote recovery');if(member.dormancy?.mode&&member.dormancy.mode!=='active')reasons.push('dormant');if(unitCount>=PROPAGULE_CA…" }, { "file": "../propagules.js", "line": 15, "excerpt": "…te?.stage==='recovering')reasons.push('zygote recovery');if(member.dormancy?.mode&&member.dormancy.mode!=='active')reasons.push('dormant');if(unitCount>=PROPAGULE_CAP)reasons.push(`particl…" }, { "file": "../adaptations.js", "line": 7, "excerpt": " dormancy:Object.freeze({id:'dormancy',version:1,family:ALGA_FAMILY,genes:['dormancy','storageInves…" }, { "file": "../adaptations.js", "line": 7, "excerpt": " dormancy:Object.freeze({id:'dormancy',version:1,family:ALGA_FAMILY,genes:['dormancy','storageInvestment'],states:['active','en…" }, { "file": "../adaptations.js", "line": 7, "excerpt": " dormancy:Object.freeze({id:'dormancy',version:1,family:ALGA_FAMILY,genes:['dormancy','storageInvestment'],states:['active','entering','dormant','germinating'],entry:'12 s su…" }, { "file": "../adaptations.js", "line": 9, "excerpt": "…e.genes;if(member.genome.locomotionFamily!==ALGA_FAMILY)return {reserve:{supported:false},dormancy:{supported:false}};const capacity=ADAPTATION_REGISTRY.reserve.capacity(g),d=member.dorman…" }, { "file": "../adaptations.js", "line": 9, "excerpt": "…rmancy:{supported:false}};const capacity=ADAPTATION_REGISTRY.reserve.capacity(g),d=member.dormancy,rate=member.controller.rates||{};return {reserve:{supported:capacity>0,capacity,stored:me…" }, { "file": "../adaptations.js", "line": 9, "excerpt": "…ve||0)>=capacity?'full':'inactive',chargeRate:rate.charge||0,releaseRate:rate.release||0},dormancy:{supported:(g.dormancy??0)>=.5,state:(g.dormancy??0)<.5?'unsupported':d?.mode||'active',p…" }, { "file": "../adaptations.js", "line": 9, "excerpt": "…:'inactive',chargeRate:rate.charge||0,releaseRate:rate.release||0},dormancy:{supported:(g.dormancy??0)>=.5,state:(g.dormancy??0)<.5?'unsupported':d?.mode||'active',poorMs:d?.poorMs||0,good…" }, { "file": "../adaptations.js", "line": 9, "excerpt": "…e.charge||0,releaseRate:rate.release||0},dormancy:{supported:(g.dormancy??0)>=.5,state:(g.dormancy??0)<.5?'unsupported':d?.mode||'active',poorMs:d?.poorMs||0,goodMs:d?.goodMs||0,blocked:d?…" }, { "file": "../appearance.js", "line": 85, "excerpt": " if((genes.dormancy||0)>=.5&&(genes.storageInvestment||0)>=.5)return looks.sleepseed;" } ], "emissionBand": [ { "file": "../model.js", "line": 60, "excerpt": " emissionBand:{min:0,max:1,default:0,unit:'spectrum turn',category:'emission',role:'Emitted color band'…" }, { "file": "../model.js", "line": 137, "excerpt": " if((g.fusionCapacity||0)>=.8&&(g.emissionCapacity||0)>=.8&&((g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bodySize>=1.2&&(g.emissionBand||0)>.25&&(g.emissionBand||0)<.4)))return 0;" }, { "file": "../model.js", "line": 137, "excerpt": "…issionCapacity||0)>=.8&&((g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bodySize>=1.2&&(g.emissionBand||0)>.25&&(g.emissionBand||0)<.4)))return 0;" }, { "file": "../model.js", "line": 137, "excerpt": "…(g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bodySize>=1.2&&(g.emissionBand||0)>.25&&(g.emissionBand||0)<.4)))return 0;" }, { "file": "../model.js", "line": 138, "excerpt": " if((g.adhesion||0)>.8&&(g.emissionCapacity||0)>.9&&(g.emissionBand||0)<.08)return 0;" }, { "file": "../model.js", "line": 139, "excerpt": " if((g.emissionCapacity||0)>.9&&(g.emissionBand||0)>.45&&(g.emissionBand||0)<.65)return 0;" }, { "file": "../model.js", "line": 139, "excerpt": " if((g.emissionCapacity||0)>.9&&(g.emissionBand||0)>.45&&(g.emissionBand||0)<.65)return 0;" }, { "file": "../model.js", "line": 140, "excerpt": " if((g.emissionCapacity||0)>.8&&(g.emissionBand||0)<.2)return 0;" }, { "file": "../model.js", "line": 141, "excerpt": " if((g.emissionCapacity||0)>.7&&(g.emissionBand||0)>.75)return 0;" }, { "file": "../population.js", "line": 53, "excerpt": "…r','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','emissionBand'].includes(key)||['flocking','divisionTempo','lightPreference','lightTolerance','metaboli…" }, { "file": "../signals.js", "line": 12, "excerpt": "export function pulseInterval(member){const g=member.genome.genes,band=g.emissionBand??0,size=g.bodySize??1;return Math.round((4400+band*7700+size*850)*(.9+idFraction(member.i…" }, { "file": "../signals.js", "line": 14, "excerpt": "…ber.genome,g=genome.genes,family=genome.locomotionFamily,program=g.lightProgram??0,band=g.emissionBand??0,prior=signalTraits.get(genome);if(prior&&prior.family===family&&prior.program===progra…" }, { "file": "../signals.js", "line": 17, "excerpt": "…onFamily===GRAZER_FAMILY&&(member.genome.genes.lightProgram??0)===3&&(member.genome.genes.emissionBand??0)>.7}" }, { "file": "../signals.js", "line": 26, "excerpt": "…width=rg.spectralWidth??1,spectral=Math.exp(-.5*(circularDistance(rg.spectralCenter??0,sg.emissionBand??0)/(.06+.26*bandwidth))**2);return clamp(power*investment*spectral/(1+(d/.045)**2)*Math.…" }, { "file": "../signals.js", "line": 28, "excerpt": "…Math.atan2(other.cell.y-member.cell.y,other.cell.x-member.cell.x),band:other.genome.genes.emissionBand??0,pulseUntil:other.bio?.pulseUntil||0}}if(disturbanceSense>0){const speed=Math.hypot(oth…" }, { "file": "../appearance.js", "line": 76, "excerpt": " if(genes.bodySize>=1.45&&(genes.emissionBand||0)<.2)return looks.saillantern;" }, { "file": "../appearance.js", "line": 77, "excerpt": " if(genes.bodySize<=.71&&(genes.emissionBand||0)>.4&&(genes.emissionBand||0)<.6)return looks.pinlight;" }, { "file": "../appearance.js", "line": 77, "excerpt": " if(genes.bodySize<=.71&&(genes.emissionBand||0)>.4&&(genes.emissionBand||0)<.6)return looks.pinlight;" }, { "file": "../appearance.js", "line": 78, "excerpt": " if(genes.bodySize>=1.2&&(genes.emissionBand||0)>.25&&(genes.emissionBand||0)<.4)return looks.mintbell;" }, { "file": "../appearance.js", "line": 78, "excerpt": " if(genes.bodySize>=1.2&&(genes.emissionBand||0)>.25&&(genes.emissionBand||0)<.4)return looks.mintbell;" }, { "file": "../appearance.js", "line": 79, "excerpt": " if(genes.bodySize<=.76&&(genes.emissionBand||0)>.85)return looks.needlestar;" }, { "file": "../appearance.js", "line": 81, "excerpt": " if((genes.adhesion||0)>.8&&(genes.emissionCapacity||0)>.9&&(genes.emissionBand||0)<.08)return looks.polar_chain;" }, { "file": "../appearance.js", "line": 82, "excerpt": " if((genes.emissionCapacity||0)>.9&&(genes.emissionBand||0)>.45&&(genes.emissionBand||0)<.65)return looks.moonlantern;" }, { "file": "../appearance.js", "line": 82, "excerpt": " if((genes.emissionCapacity||0)>.9&&(genes.emissionBand||0)>.45&&(genes.emissionBand||0)<.65)return looks.moonlantern;" }, { "file": "../appearance.js", "line": 83, "excerpt": " if((genes.emissionCapacity||0)>.8&&(genes.emissionBand||0)<.2)return looks.emberreed;" }, { "file": "../appearance.js", "line": 84, "excerpt": " if((genes.emissionCapacity||0)>.7&&(genes.emissionBand||0)>.75)return looks.ghostpearl;" } ], "emissionCapacity": [ { "file": "../model.js", "line": 58, "excerpt": " emissionCapacity:{min:0,max:1,default:0,unit:'light organ',category:'emission',role:'Pulse capacity',effec…" }, { "file": "../model.js", "line": 127, "excerpt": "…'storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxificat…" }, { "file": "../model.js", "line": 137, "excerpt": " if((g.fusionCapacity||0)>=.8&&(g.emissionCapacity||0)>=.8&&((g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bodySize>=1.2&&(g.emissionBand||…" }, { "file": "../model.js", "line": 138, "excerpt": " if((g.adhesion||0)>.8&&(g.emissionCapacity||0)>.9&&(g.emissionBand||0)<.08)return 0;" }, { "file": "../model.js", "line": 139, "excerpt": " if((g.emissionCapacity||0)>.9&&(g.emissionBand||0)>.45&&(g.emissionBand||0)<.65)return 0;" }, { "file": "../model.js", "line": 140, "excerpt": " if((g.emissionCapacity||0)>.8&&(g.emissionBand||0)<.2)return 0;" }, { "file": "../model.js", "line": 141, "excerpt": " if((g.emissionCapacity||0)>.7&&(g.emissionBand||0)>.75)return 0;" }, { "file": "../regulation.js", "line": 18, "excerpt": "…genome.genes||{},family=genome.locomotionFamily,alga=family==='flagellar-alga',capacity=g.emissionCapacity||0;" }, { "file": "../regulation.js", "line": 30, "excerpt": " const g=member.genome.genes,program=g[`${key}Program`]??0,capacity=key==='light'?(g.emissionCapacity||0)*(g.emissionPower||0):g[`${key}Production`]||0;" }, { "file": "../population.js", "line": 53, "excerpt": "…','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','emissionBand'].includes(key)||['flocking','divisionTempo','lightPrefere…" }, { "file": "../signals.js", "line": 49, "excerpt": "….ambientSense??0)+(g.directionalSense??0)+(g.chemicalSense??0)+(g.disturbanceSense??0)+(g.emissionCapacity??0)+apparatus*.35)+regulatorCost);" }, { "file": "../appearance.js", "line": 75, "excerpt": " if((genes.fusionCapacity||0)>=.8&&(genes.emissionCapacity||0)>=.8){" }, { "file": "../appearance.js", "line": 81, "excerpt": " if((genes.adhesion||0)>.8&&(genes.emissionCapacity||0)>.9&&(genes.emissionBand||0)<.08)return looks.polar_chain;" }, { "file": "../appearance.js", "line": 82, "excerpt": " if((genes.emissionCapacity||0)>.9&&(genes.emissionBand||0)>.45&&(genes.emissionBand||0)<.65)return looks.moonlantern…" }, { "file": "../appearance.js", "line": 83, "excerpt": " if((genes.emissionCapacity||0)>.8&&(genes.emissionBand||0)<.2)return looks.emberreed;" }, { "file": "../appearance.js", "line": 84, "excerpt": " if((genes.emissionCapacity||0)>.7&&(genes.emissionBand||0)>.75)return looks.ghostpearl;" }, { "file": "../appearance.js", "line": 108, "excerpt": " if(family===CARNIVORE_FAMILY)return (genes.emissionCapacity||0)>.85&&(genes.rhythmStrength||0)>.85?looks.lurejaw:(genes.bodySize||1)>=1.3?looks.broad…" }, { "file": "../appearance.js", "line": 110, "excerpt": " if((genes.emissionCapacity||0)>.9&&(genes.disturbanceSense||0)>.8)return looks.murkflash;" }, { "file": "../appearance.js", "line": 111, "excerpt": " if((genes.emissionCapacity||0)>.7&&(genes.flocking||0)>.8)return looks.murmurfin;" }, { "file": "../appearance.js", "line": 119, "excerpt": " if((genes.emissionCapacity||0)>.7&&(genes.flocking||0)>.8)return looks.glimmershoal;" }, { "file": "../appearance.js", "line": 126, "excerpt": " if((genes.rhythmStrength||0)>.8&&(genes.emissionCapacity||0)>.6)return looks.lanternsifter;" } ], "emissionPower": [ { "file": "../model.js", "line": 59, "excerpt": " emissionPower:{min:0,max:1,default:0,unit:'pulse effort',category:'emission',role:'Pulse brightness',ef…" }, { "file": "../regulation.js", "line": 30, "excerpt": "…ome.genes,program=g[`${key}Program`]??0,capacity=key==='light'?(g.emissionCapacity||0)*(g.emissionPower||0):g[`${key}Production`]||0;" }, { "file": "../population.js", "line": 53, "excerpt": "…','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','emissionBand'].includes(key)||['flocking','divisionTempo','lightPreference','lightToler…" } ], "entrainment": [ { "file": "../model.js", "line": 41, "excerpt": " entrainment:{min:0,max:1,default:0,unit:'local lamp response',category:'activity',role:'Clock adjustm…" }, { "file": "../population.js", "line": 53, "excerpt": "…UND_GENE_RULES||genome.version===1&&['rhythmPhase','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','s…" }, { "file": "../signals.js", "line": 34, "excerpt": " const sensed=(g.ambientSense??0)*(g.entrainment??0),change=previousLamp===null?0:b.localLamp-previousLamp;" } ], "feedingAperture": [ { "file": "../model.js", "line": 100, "excerpt": " feedingAperture:{min:.7,max:1.6,default:1.3,unit:'relative mouth',category:'feeding',role:'Prey size limi…" }, { "file": "../model.js", "line": 158, "excerpt": "…*g.turnPersistence,optimum:g.thermalOptimum,sensingRadius:.17*g.sensingRange,mouthRatio:g.feedingAperture,vacuoleCapacity:normalized.locomotionFamily===OMNIVORE_FAMILY?Math.min(6,2.2*g.storage*g.…" }, { "file": "../model.js", "line": 158, "excerpt": "….metabolicPace,maintenance:(.00014+.000052*g.bodySize**2+.000025*g.sensingRange+.000025*g.feedingAperture+.000018*g.storage+.000025*g.flocking+.000025*(g.cannibalism||0)+.00002*(g.acquisitionCapa…" }, { "file": "../model.js", "line": 173, "excerpt": " consumer:['bodySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','d…" }, { "file": "../population.js", "line": 115, "excerpt": " for(let i=0;icurrentRadius(m,state.environment.volume),v…" }, { "file": "../population.js", "line": 538, "excerpt": "…Y,OPENWATER_FAMILY,OMNIVORE_FAMILY].includes(member.genome.locomotionFamily)){const flock=flocking.get(member.id);member.controller.flockNeighbors=flock?.neighbors||0;const fuelBefore=memb…" }, { "file": "../population.js", "line": 541, "excerpt": " else {const flock=flocking.get(member.id),sparkle=usesDebrisMetabolism(member.genome);member.controller.flockNeighbo…" }, { "file": "../compounds.js", "line": 23, "excerpt": " socialProduction:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flocking??0,g.crossAffinity??0),s…" }, { "file": "../compounds.js", "line": 23, "excerpt": "…duction:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialResponse:.45" }, { "file": "../flocking.js", "line": 13, "excerpt": " if(members.length<2||!members.some(member=>(member.genome.genes.flocking||0)>0))continue;" }, { "file": "../flocking.js", "line": 14, "excerpt": "…ll.y*scale,z=cell.z*DEPTH_ASPECT*scale,pitch=member.motion?.pitch||0;return {id:member.id,flocking:member.genome.genes.flocking||0,x,y,z,heading:cell.heading,pitch,bx:Math.floor(x/range),b…" }, { "file": "../flocking.js", "line": 14, "excerpt": "…ECT*scale,pitch=member.motion?.pitch||0;return {id:member.id,flocking:member.genome.genes.flocking||0,x,y,z,heading:cell.heading,pitch,bx:Math.floor(x/range),by:Math.floor(y/range),bz:Math…" }, { "file": "../flocking.js", "line": 16, "excerpt": " for(const own of snapshots){if(own.flocking<=0)continue;let ax=0,ay=0,az=0,cx=0,cy=0,cz=0,sx=0,sy=0,sz=0,count=0;" }, { "file": "../appearance.js", "line": 88, "excerpt": " if(genes.adhesion>=.8&&genes.flocking>=.85)return looks.volvox;" }, { "file": "../appearance.js", "line": 93, "excerpt": " if((genes.flocking||0)>=.35)return looks.schooling_alga;" }, { "file": "../appearance.js", "line": 111, "excerpt": " if((genes.emissionCapacity||0)>.7&&(genes.flocking||0)>.8)return looks.murmurfin;" }, { "file": "../appearance.js", "line": 114, "excerpt": " if((genes.flocking||0)>=.35)return looks.schooling_ciliate;" }, { "file": "../appearance.js", "line": 119, "excerpt": " if((genes.emissionCapacity||0)>.7&&(genes.flocking||0)>.8)return looks.glimmershoal;" }, { "file": "../appearance.js", "line": 121, "excerpt": " if((genes.flocking||0)>=.35)return looks.schooling_flagellate;" } ], "foodEnergy": [ { "file": "../model.js", "line": 67, "excerpt": " foodEnergy:{min:.5,max:1.6,default:1,unit:'relative recovery',category:'feeding',role:'Recoverable p…" }, { "file": "../model.js", "line": 167, "excerpt": "…*Math.max(0,g.biomassDensity-1)+.00003*Math.max(0,g.divisionTempo-1)+.000025*Math.max(0,g.foodEnergy-1)+.000045*g.storageInvestment+.000025*g.dormancy+.000065*g.coatInvestment)*g.metabolicPa…" }, { "file": "../model.js", "line": 174, "excerpt": "…,'adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvestment']," }, { "file": "../grazer.js", "line": 22, "excerpt": "// foodEnergy is the prey's recoverable fraction, never a multiplier above its" }, { "file": "../grazer.js", "line": 24, "excerpt": "…yFraction=prey=>prey.genome.locomotionFamily===ALGA_FAMILY?clamp(.2+.5*(prey.genome.genes.foodEnergy??1),0,1):.78;" }, { "file": "../grazer.js", "line": 45, "excerpt": " const quality=alga?(prey.genome.genes.foodEnergy??1)*Math.sqrt(prey.biomass/structuralMass(prey.genome)):Math.sqrt(prey.biomass/structural…" }, { "file": "../population.js", "line": 53, "excerpt": "…ey)||genome.locomotionFamily===ALGA_FAMILY&&['adhesion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatI…" }, { "file": "../appearance.js", "line": 95, "excerpt": " if((genes.foodEnergy||1)>=1.4)return looks.sugar;" } ], "fusionCapacity": [ { "file": "../model.js", "line": 70, "excerpt": " fusionCapacity:{min:0,max:1,default:0,unit:'gamete investment',category:'reproduction',role:'Compatible …" }, { "file": "../model.js", "line": 137, "excerpt": " if((g.fusionCapacity||0)>=.8&&(g.emissionCapacity||0)>=.8&&((g.bodySize>=1.45&&(g.emissionBand||0)<.2)||(g.bod…" }, { "file": "../model.js", "line": 167, "excerpt": "…35*g.nutrientUptake+.00004*g.adhesion+.000025*g.flocking+.00002*g.crossAffinity+.00003*(g.fusionCapacity||0)+.00003*Math.max(0,g.biomassDensity-1)+.00003*Math.max(0,g.divisionTempo-1)+.000025*Ma…" }, { "file": "../model.js", "line": 174, "excerpt": "…,'metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvest…" }, { "file": "../population.js", "line": 53, "excerpt": "…o','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetaboli…" }, { "file": "../propagules.js", "line": 11, "excerpt": "…d(member){const g=member.genome.genes;if(member.genome.locomotionFamily===ALGA_FAMILY&&(g.fusionCapacity??0)>=.7&&(g.crossAffinity??0)>=.5)return 'gamete';if(member.genome.locomotionFamily===CRA…" }, { "file": "../appearance.js", "line": 75, "excerpt": " if((genes.fusionCapacity||0)>=.8&&(genes.emissionCapacity||0)>=.8){" } ], "irritantResistance": [ { "file": "../model.js", "line": 53, "excerpt": " irritantResistance:{min:0,max:1,default:0,unit:'specific resistance',category:'chemical defense',role:'Irrit…" }, { "file": "../model.js", "line": 127, "excerpt": "…directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxification','organicProduction','organicRecep…" }, { "file": "../population.js", "line": 53, "excerpt": "…'sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistance','detoxification'].includes(key)||genome.locomotion…" }, { "file": "../toxicology.js", "line": 20, "excerpt": " const upkeep=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0)),paid=Math.min(…" }, { "file": "../toxicology.js", "line": 24, "excerpt": " cost+=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0));const paid=Mat…" } ], "lightPreference": [ { "file": "../model.js", "line": 2, "excerpt": "import {lightPreference} from './light-preference.js?v=9';" }, { "file": "../model.js", "line": 43, "excerpt": " lightPreference:{min:0,max:1,default:.5,unit:'0–100 irradiance target',category:'sensing',role:'Preferred…" }, { "file": "../model.js", "line": 245, "excerpt": " const c=state.cell,e=state.environment,ctl=state.controller,prefs=lightPreference(state.organism.genome),probes=sensorProbes(c,p.radius/volumeScale(e.volume),e.volume),sco…" }, { "file": "../grazer.js", "line": 2, "excerpt": "import {lightPreference,localLightGradient} from './light-preference.js?v=9';" }, { "file": "../grazer.js", "line": 111, "excerpt": " let lampCue=null;if(!threat&&!target&&now>=g.cueCooldownUntil&&cueBearing===null&&lightPreference(member.genome).investment>0){const cached=lightCueCache.get(member);if(!cached||now>=cach…" }, { "file": "../population.js", "line": 53, "excerpt": "…n===1&&['rhythmPhase','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','di…" }, { "file": "../population.js", "line": 53, "excerpt": "…sionCapacity','emissionPower','emissionBand'].includes(key)||['flocking','divisionTempo','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','ma…" }, { "file": "../population.js", "line": 150, "excerpt": "…ce=sources[group],genes={...source.genome.genes};if(group===3){genes.ambientSense=0;genes.lightPreference=.5;genes.lightTolerance=1}const member=add(ALGA_FAMILY,.34+group*.11,.43+i*.045,.31+i*.03…" }, { "file": "../light-preference.js", "line": 4, "excerpt": "export const lightPreference=genome=>({preferred:100*clamp(genome?.genes?.lightPreference??.5,0,1),halfWidth:8+42*clam…" }, { "file": "../light-preference.js", "line": 4, "excerpt": "export const lightPreference=genome=>({preferred:100*clamp(genome?.genes?.lightPreference??.5,0,1),halfWidth:8+42*clamp(genome?.genes?.lightTolerance??1,0,1),investment:genome?.ge…" }, { "file": "../light-preference.js", "line": 4, "excerpt": "…0,1),halfWidth:8+42*clamp(genome?.genes?.lightTolerance??1,0,1),investment:genome?.genes?.lightPreference===undefined||(genome?.genes?.lightTolerance??1)>=1?0:clamp(genome?.genes?.ambientSense??0…" }, { "file": "../light-preference.js", "line": 5, "excerpt": "export function lightSuitability(light,genome){const {preferred,halfWidth}=lightPreference(genome);return Math.exp(-.5*((light-preferred)/halfWidth)**2)}" }, { "file": "../light-preference.js", "line": 9, "excerpt": " const investment=lightPreference(genome).investment;if(investment<=0)return null;" } ], "lightProgram": [ { "file": "../regulation.js", "line": 5, "excerpt": " lightProgram:programRule('Biological light trigger')," }, { "file": "../regulation.js", "line": 19, "excerpt": " return {lightProgram:capacity<=0?0:alga&&capacity>.9?7:(g.directionalSense||0)>.6&&(g.disturbanceSense||0)>.65…" }, { "file": "../signals.js", "line": 14, "excerpt": "…ember){const genome=member.genome,g=genome.genes,family=genome.locomotionFamily,program=g.lightProgram??0,band=g.emissionBand??0,prior=signalTraits.get(genome);if(prior&&prior.family===family&…" }, { "file": "../signals.js", "line": 17, "excerpt": "…Flash(member){return member.genome.locomotionFamily===GRAZER_FAMILY&&(member.genome.genes.lightProgram??0)===3&&(member.genome.genes.emissionBand??0)>.7}" }, { "file": "../signals.js", "line": 38, "excerpt": " if([5,8].includes(g.lightProgram??0)&&best?.value>.035&&b.reactionAt===0)b.reactionAt=now+600;" }, { "file": "../signals.js", "line": 40, "excerpt": "…ll.y,(other.cell.z-member.cell.z)*DEPTH_ASPECT)*scale<.11)?1:0),receptor:[5,8].includes(g.lightProgram??0)?b.reactionAt>0&&now>=b.reactionAt?Math.max(receptor,(best?.value||0)/.035):0:receptor…" }, { "file": "../signals.js", "line": 44, "excerpt": "…StartAt=now;b.pulseUntil=decision.state.until;b.cooldownUntil=decision.state.nextAt;if((g.lightProgram??0)!==7)b.pulseCount++;b.reactionAt=0}" }, { "file": "../signals.js", "line": 46, "excerpt": " const envelope=(g.lightProgram??0)===7?1:pulseEnvelope(member,b,Math.min(b.pulseUntil-1,now+dt*.5));" }, { "file": "../signals.js", "line": 49, "excerpt": " const regulatorCost=.000004*[\"lightProgram\",\"organicProgram\",\"alarmProgram\",\"socialProgram\"].reduce((sum,key)=>sum+(g[key]>0?1:0),0)…" } ], "lightTolerance": [ { "file": "../model.js", "line": 44, "excerpt": " lightTolerance:{min:0,max:1,default:1,unit:'response width',category:'sensing',role:'Lamp habitat tolera…" }, { "file": "../population.js", "line": 53, "excerpt": "…se','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','…" }, { "file": "../population.js", "line": 53, "excerpt": "…ssionPower','emissionBand'].includes(key)||['flocking','divisionTempo','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquis…" }, { "file": "../population.js", "line": 150, "excerpt": "…...source.genome.genes};if(group===3){genes.ambientSense=0;genes.lightPreference=.5;genes.lightTolerance=1}const member=add(ALGA_FAMILY,.34+group*.11,.43+i*.045,.31+i*.03,genes,65);member.biomas…" }, { "file": "../light-preference.js", "line": 4, "excerpt": "…red:100*clamp(genome?.genes?.lightPreference??.5,0,1),halfWidth:8+42*clamp(genome?.genes?.lightTolerance??1,0,1),investment:genome?.genes?.lightPreference===undefined||(genome?.genes?.lightToler…" }, { "file": "../light-preference.js", "line": 4, "excerpt": "…tTolerance??1,0,1),investment:genome?.genes?.lightPreference===undefined||(genome?.genes?.lightTolerance??1)>=1?0:clamp(genome?.genes?.ambientSense??0,0,1)});" } ], "matingType": [ { "file": "../model.js", "line": 71, "excerpt": " matingType:{min:0,max:1,default:0,unit:'compatibility type',category:'reproduction',role:'Fusion com…" }, { "file": "../population.js", "line": 53, "excerpt": "…ce','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSyn…" }, { "file": "../propagules.js", "line": 18, "excerpt": "…e),sourceId:member.id,sourceLineageId:member.lineageId,sourceGeneration:member.generation,matingType:(member.genome.genes.matingType??0)>=.5?1:0,bornAt:now,expiresAt:now+(kind==='gamete'?450…" }, { "file": "../propagules.js", "line": 18, "excerpt": "…ageId:member.lineageId,sourceGeneration:member.generation,matingType:(member.genome.genes.matingType??0)>=.5?1:0,bornAt:now,expiresAt:now+(kind==='gamete'?45000:90000)};medium.units.push(uni…" }, { "file": "../propagules.js", "line": 19, "excerpt": "…ction compatibleGametes(a,b,volume){return a!==b&&a.kind==='gamete'&&b.kind==='gamete'&&a.matingType!==b.matingType&&a.sourceId!==b.sourceId&&a.genome.locomotionFamily===ALGA_FAMILY&&b.genom…" }, { "file": "../propagules.js", "line": 19, "excerpt": "…eGametes(a,b,volume){return a!==b&&a.kind==='gamete'&&b.kind==='gamete'&&a.matingType!==b.matingType&&a.sourceId!==b.sourceId&&a.genome.locomotionFamily===ALGA_FAMILY&&b.genome.locomotionFam…" }, { "file": "../propagules.js", "line": 21, "excerpt": "…rceGeneration)&&unit.sourceGeneration>=0&&unit.sourceGeneration<=1e6&&[0,1].includes(unit.matingType)&&finite(unit.bornAt)&&unit.bornAt>=0&&unit.bornAt<=now&&finite(unit.expiresAt)&&unit.exp…" } ], "metabolicPace": [ { "file": "../model.js", "line": 64, "excerpt": " metabolicPace:{min:.8,max:1.2,default:1,unit:'relative pace',category:'metabolism',role:'Inherited meta…" }, { "file": "../model.js", "line": 93, "excerpt": " metabolicPace:GENE_RULES.metabolicPace," }, { "file": "../model.js", "line": 93, "excerpt": " metabolicPace:GENE_RULES.metabolicPace," }, { "file": "../model.js", "line": 109, "excerpt": "export const PROTOTYPE_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.sl…" }, { "file": "../model.js", "line": 109, "excerpt": "…PROTOTYPE_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersi…" }, { "file": "../model.js", "line": 110, "excerpt": "export const DRIFTER_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,buoyancy:{min:-1,max:1,default:0,unit:'vertical bias',category:'…" }, { "file": "../model.js", "line": 110, "excerpt": "…t DRIFTER_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,buoyancy:{min:-1,max:1,default:0,unit:'vertical bias',category:'locomotion',role:'Passive…" }, { "file": "../model.js", "line": 111, "excerpt": "export const ATTACHED_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.slowdownThreshold,contractility:{mi…" }, { "file": "../model.js", "line": 111, "excerpt": "… ATTACHED_GENE_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.slowdownThreshold,contractility:{min:0,max:1,default:.6,unit…" }, { "file": "../model.js", "line": 158, "excerpt": "…?.000018:normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?.00002:.000012)*g.processing*g.metabolicPace,maintenance:(.00014+.000052*g.bodySize**2+.000025*g.sensingRange+.000025*g.feedingApertur…" }, { "file": "../model.js", "line": 158, "excerpt": "…amily===APEX_FAMILY?.00011:normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?.00015:0))*g.metabolicPace,activeCost:(normalized.locomotionFamily===OPENWATER_FAMILY?.00025:normalized.locomotionFa…" }, { "file": "../model.js", "line": 159, "excerpt": "…hermalOptimum,maintenance:(.000055+.000035*g.bodySize**2+.00002*(g.sporeInvestment||0))*g.metabolicPace,activeCost:.00010*(g.propulsion??g.contractility??0)};" }, { "file": "../model.js", "line": 164, "excerpt": " photoCapacity:.0038*(.25+g.photosyntheticInvestment)*g.metabolicPace," }, { "file": "../model.js", "line": 167, "excerpt": "….foodEnergy-1)+.000045*g.storageInvestment+.000025*g.dormancy+.000065*g.coatInvestment)*g.metabolicPace," }, { "file": "../model.js", "line": 173, "excerpt": "…urnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','divisionTempo']," }, { "file": "../model.js", "line": 174, "excerpt": " alga:['bodySize','propulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity'…" }, { "file": "../model.js", "line": 175, "excerpt": " prototype:['bodySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeInvestment']" }, { "file": "../population.js", "line": 53, "excerpt": "…sionBand'].includes(key)||['flocking','divisionTempo','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','…" }, { "file": "../population.js", "line": 325, "excerpt": "const ACQUIRABLE_LOCI=['thermalOptimum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambientSense'];" }, { "file": "../population.js", "line": 579, "excerpt": "…sult=copy(normalizeGenome(genome)),changes=[],rules=geneRules(result);for(const gene of ['metabolicPace','propulsion','contractility','buoyancy','slowdownThreshold']){if(!(gene in rules))contin…" }, { "file": "../population.js", "line": 579, "excerpt": "…cy','slowdownThreshold']){if(!(gene in rules))continue;const old=result.genes[gene];if(!['metabolicPace','buoyancy','slowdownThreshold'].includes(gene)&&old<=0)continue;const range=gene==='meta…" }, { "file": "../population.js", "line": 579, "excerpt": "…Pace','buoyancy','slowdownThreshold'].includes(gene)&&old<=0)continue;const range=gene==='metabolicPace'?.04:gene==='buoyancy'?.04:gene==='slowdownThreshold'?7:.08,next=clamp(old+(['buoyancy','…" } ], "mobilization": [ { "file": "../model.js", "line": 77, "excerpt": " mobilization:{min:0,max:1,default:0,unit:'release rate',category:'survival',role:'Reserve mobilization…" }, { "file": "../model.js", "line": 77, "excerpt": "…mobilization:{min:0,max:1,default:0,unit:'release rate',category:'survival',role:'Reserve mobilization',effect:'Releases stored energy below 35 usable energy, at 85% efficiency',cost:'Reserve …" }, { "file": "../model.js", "line": 267, "excerpt": " const release=charge===0&&usable<35?Math.min(state.reserve,1.5*(g.mobilization??0)*dt/1000,(35-Math.max(0,usable))/.85):0;state.reserve-=release;usable+=release*.85;" }, { "file": "../population.js", "line": 53, "excerpt": "…ty','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatInvestment'].includes(key))&&genome.genes[key]===undefined||typeof genom…" }, { "file": "../adaptations.js", "line": 6, "excerpt": "…id:'reserve',version:1,family:ALGA_FAMILY,genes:['storageInvestment','reserveAllocation','mobilization'],capacity:g=>80*(g.storageInvestment??0),states:['inactive','charging','releasing','full…" }, { "file": "../adaptations.js", "line": 6, "excerpt": "…stment??0),states:['inactive','charging','releasing','full'],cost:'20% charging loss; 15% mobilization loss',priority:'internal transfer after usable photosynthetic gain; no new gross producti…" } ], "motorResistance": [ { "file": "../model.js", "line": 54, "excerpt": " motorResistance:{min:0,max:1,default:0,unit:'specific resistance',category:'chemical defense',role:'Motor…" }, { "file": "../model.js", "line": 127, "excerpt": "…emicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxification','organicProduction','organicReception','alarmProduc…" }, { "file": "../population.js", "line": 53, "excerpt": "…owdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistance','detoxification'].includes(key)||genome.locomotionFamily===ALGA_FAMI…" }, { "file": "../toxicology.js", "line": 20, "excerpt": " const upkeep=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0)),paid=Math.min(member.energy,upkeep);m…" }, { "file": "../toxicology.js", "line": 24, "excerpt": " cost+=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0));const paid=Math.min(member.energy,cos…" } ], "nutrientUptake": [ { "file": "../model.js", "line": 85, "excerpt": " nutrientUptake:{min:0,max:1,default:.55,unit:'medium uptake',category:'metabolism',role:'Nutrient uptake…" }, { "file": "../model.js", "line": 165, "excerpt": " nutrientCapacity:.25+.75*g.nutrientUptake," }, { "file": "../model.js", "line": 167, "excerpt": "… maintenance:(.000105+.000055*g.bodySize**2+.000045*g.photosyntheticInvestment+.000035*g.nutrientUptake+.00004*g.adhesion+.000025*g.flocking+.00002*g.crossAffinity+.00003*(g.fusionCapacity||0)+…" }, { "file": "../model.js", "line": 174, "excerpt": "…ga:['bodySize','propulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity'…" }, { "file": "../appearance.js", "line": 100, "excerpt": " if((genes.photosyntheticInvestment||0)>=.88&&(genes.nutrientUptake||0)<.9)return looks.sun;" }, { "file": "../appearance.js", "line": 101, "excerpt": " if((genes.nutrientUptake||0)>=.9)return looks.mineral;" } ], "organicProduction": [ { "file": "../model.js", "line": 127, "excerpt": "…inSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxification','organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReceptio…" }, { "file": "../regulation.js", "line": 20, "excerpt": " organicProgram:(g.organicProduction||0)>0&&alga?6:0," }, { "file": "../compounds.js", "line": 13, "excerpt": "export const COMPOUND_LOCI=Object.freeze({organic:Object.freeze({production:'organicProduction',reception:'organicReception',response:'organicResponse'}),alarm:Object.freeze({productio…" }, { "file": "../compounds.js", "line": 21, "excerpt": " organicProduction:sense,organicReception:sense,organicResponse:.7," }, { "file": "../signals.js", "line": 48, "excerpt": " const apparatus=['organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReceptio…" } ], "organicProgram": [ { "file": "../regulation.js", "line": 6, "excerpt": " organicProgram:programRule('Organic secretion trigger')," }, { "file": "../regulation.js", "line": 20, "excerpt": " organicProgram:(g.organicProduction||0)>0&&alga?6:0," }, { "file": "../signals.js", "line": 49, "excerpt": " const regulatorCost=.000004*[\"lightProgram\",\"organicProgram\",\"alarmProgram\",\"socialProgram\"].reduce((sum,key)=>sum+(g[key]>0?1:0),0);const upkeep=dt*…" } ], "organicReception": [ { "file": "../model.js", "line": 127, "excerpt": "…ntResistance','motorResistance','sensoryResistance','detoxification','organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'];" }, { "file": "../compounds.js", "line": 13, "excerpt": "…OUND_LOCI=Object.freeze({organic:Object.freeze({production:'organicProduction',reception:'organicReception',response:'organicResponse'}),alarm:Object.freeze({production:'alarmProduction',reception…" }, { "file": "../compounds.js", "line": 21, "excerpt": " organicProduction:sense,organicReception:sense,organicResponse:.7," }, { "file": "../signals.js", "line": 48, "excerpt": " const apparatus=['organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'].reduce((sum,key…" } ], "organicResponse": [ { "file": "../compounds.js", "line": 13, "excerpt": "…anic:Object.freeze({production:'organicProduction',reception:'organicReception',response:'organicResponse'}),alarm:Object.freeze({production:'alarmProduction',reception:'alarmReception',response:…" }, { "file": "../compounds.js", "line": 21, "excerpt": " organicProduction:sense,organicReception:sense,organicResponse:.7," } ], "photoGlowThreshold": [ { "file": "../model.js", "line": 88, "excerpt": " photoGlowThreshold:{min:0,max:1,default:.18,unit:'fraction of ambient light',category:'emission',role:'Ambie…" }, { "file": "../model.js", "line": 152, "excerpt": "…sion<3&&key in COMPOUND_GENE_RULES||input.version<4&&key in REGULATION_GENE_RULES||key==='photoGlowThreshold'&&input.version<4&&input.genes?.[key]===undefined)continue;const fallback=key==='debrisMe…" }, { "file": "../population.js", "line": 53, "excerpt": "…ocking','divisionTempo','lightPreference','lightTolerance','metabolicPace','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold…" }, { "file": "../signals.js", "line": 42, "excerpt": "…d=member.genome.locomotionFamily!==ALGA_FAMILY||(g.ambientSense??0)<=0||b.ambientLamp<=(g.photoGlowThreshold??.18)*100;" } ], "photosyntheticInvestment": [ { "file": "../model.js", "line": 84, "excerpt": " photosyntheticInvestment:{min:0,max:1,default:.6,unit:'light capacity',category:'metabolism',role:'Light conversio…" }, { "file": "../model.js", "line": 164, "excerpt": " photoCapacity:.0038*(.25+g.photosyntheticInvestment)*g.metabolicPace," }, { "file": "../model.js", "line": 167, "excerpt": " maintenance:(.000105+.000055*g.bodySize**2+.000045*g.photosyntheticInvestment+.000035*g.nutrientUptake+.00004*g.adhesion+.000025*g.flocking+.00002*g.crossAffinity+.000…" }, { "file": "../model.js", "line": 174, "excerpt": " alga:['bodySize','propulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity',…" }, { "file": "../appearance.js", "line": 97, "excerpt": " if((genes.bodySize||1)>1.24&&(genes.photosyntheticInvestment||0)>.8)return looks.veil;" }, { "file": "../appearance.js", "line": 99, "excerpt": " if((genes.bodySize||1)<.77&&(genes.photosyntheticInvestment||0)>=.8)return looks.bloom;" }, { "file": "../appearance.js", "line": 100, "excerpt": " if((genes.photosyntheticInvestment||0)>=.88&&(genes.nutrientUptake||0)<.9)return looks.sun;" } ], "pigmentB": [ { "file": "../model.js", "line": 74, "excerpt": " pigmentB:{min:-1,max:1,default:-1,unit:'blue channel',category:'appearance',role:'Inherited pigmen…" }, { "file": "../population.js", "line": 324, "excerpt": "…AMILY)throw Error('Algae genomes required');const pigment=new Set(['pigmentR','pigmentG','pigmentB']),differing=[...new Set([...Object.keys(genome.genes),...Object.keys(mate.genes)])].filt…" }, { "file": "../population.js", "line": 324, "excerpt": "…enome(partner).fill,t=.35+random(pop)*.3;for(const [index,key] of ['pigmentR','pigmentG','pigmentB'].entries())genome.genes[key]=(parseInt(a.slice(1+index*2,3+index*2),16)*(1-t)+parseInt(b…" }, { "file": "../appearance.js", "line": 147, "excerpt": " if(genome?.locomotionFamily!==ALGA_FAMILY||![g.pigmentR,g.pigmentG,g.pigmentB].every(value=>Number.isFinite(value)&&value>=0))return base;" }, { "file": "../appearance.js", "line": 149, "excerpt": " if(prior&&prior.base===base&&prior.r===g.pigmentR&&prior.g===g.pigmentG&&prior.b===g.pigmentB)return prior.value;" }, { "file": "../appearance.js", "line": 150, "excerpt": " const fill=hex([g.pigmentR,g.pigmentG,g.pigmentB].map(value=>value*255));" }, { "file": "../appearance.js", "line": 152, "excerpt": " tintedAppearances.set(genome,{base,r:g.pigmentR,g:g.pigmentG,b:g.pigmentB,value});" } ], "pigmentG": [ { "file": "../model.js", "line": 73, "excerpt": " pigmentG:{min:-1,max:1,default:-1,unit:'green channel',category:'appearance',role:'Inherited pigme…" }, { "file": "../population.js", "line": 324, "excerpt": "…ly!==ALGA_FAMILY)throw Error('Algae genomes required');const pigment=new Set(['pigmentR','pigmentG','pigmentB']),differing=[...new Set([...Object.keys(genome.genes),...Object.keys(mate.gen…" }, { "file": "../population.js", "line": 324, "excerpt": "…earanceForGenome(partner).fill,t=.35+random(pop)*.3;for(const [index,key] of ['pigmentR','pigmentG','pigmentB'].entries())genome.genes[key]=(parseInt(a.slice(1+index*2,3+index*2),16)*(1-t)…" }, { "file": "../appearance.js", "line": 147, "excerpt": " if(genome?.locomotionFamily!==ALGA_FAMILY||![g.pigmentR,g.pigmentG,g.pigmentB].every(value=>Number.isFinite(value)&&value>=0))return base;" }, { "file": "../appearance.js", "line": 149, "excerpt": " if(prior&&prior.base===base&&prior.r===g.pigmentR&&prior.g===g.pigmentG&&prior.b===g.pigmentB)return prior.value;" }, { "file": "../appearance.js", "line": 150, "excerpt": " const fill=hex([g.pigmentR,g.pigmentG,g.pigmentB].map(value=>value*255));" }, { "file": "../appearance.js", "line": 152, "excerpt": " tintedAppearances.set(genome,{base,r:g.pigmentR,g:g.pigmentG,b:g.pigmentB,value});" } ], "pigmentR": [ { "file": "../model.js", "line": 72, "excerpt": " pigmentR:{min:-1,max:1,default:-1,unit:'red channel',category:'appearance',role:'Inherited pigment…" }, { "file": "../population.js", "line": 324, "excerpt": "…omotionFamily!==ALGA_FAMILY)throw Error('Algae genomes required');const pigment=new Set(['pigmentR','pigmentG','pigmentB']),differing=[...new Set([...Object.keys(genome.genes),...Object.ke…" }, { "file": "../population.js", "line": 324, "excerpt": "….fill,b=appearanceForGenome(partner).fill,t=.35+random(pop)*.3;for(const [index,key] of ['pigmentR','pigmentG','pigmentB'].entries())genome.genes[key]=(parseInt(a.slice(1+index*2,3+index*2…" }, { "file": "../appearance.js", "line": 147, "excerpt": " if(genome?.locomotionFamily!==ALGA_FAMILY||![g.pigmentR,g.pigmentG,g.pigmentB].every(value=>Number.isFinite(value)&&value>=0))return base;" }, { "file": "../appearance.js", "line": 149, "excerpt": " if(prior&&prior.base===base&&prior.r===g.pigmentR&&prior.g===g.pigmentG&&prior.b===g.pigmentB)return prior.value;" }, { "file": "../appearance.js", "line": 150, "excerpt": " const fill=hex([g.pigmentR,g.pigmentG,g.pigmentB].map(value=>value*255));" }, { "file": "../appearance.js", "line": 152, "excerpt": " tintedAppearances.set(genome,{base,r:g.pigmentR,g:g.pigmentG,b:g.pigmentB,value});" } ], "processing": [ { "file": "../model.js", "line": 56, "excerpt": "…ense',role:'Toxin clearance',effect:'Speeds internal dose clearance',cost:'Structural and processing energy'}," }, { "file": "../model.js", "line": 64, "excerpt": "…,category:'metabolism',role:'Inherited metabolic pace',effect:'Scales upkeep and resource processing',cost:'Higher pace spends more energy even when food is scarce'}," }, { "file": "../model.js", "line": 101, "excerpt": " processing:{min:.5,max:1.5,default:1,unit:'relative rate',category:'digestion',role:'Food processing…" }, { "file": "../model.js", "line": 101, "excerpt": "…processing:{min:.5,max:1.5,default:1,unit:'relative rate',category:'digestion',role:'Food processing speed',effect:'Digests stored meals faster',cost:'Raises processing cost'}," }, { "file": "../model.js", "line": 101, "excerpt": "…digestion',role:'Food processing speed',effect:'Digests stored meals faster',cost:'Raises processing cost'}," }, { "file": "../model.js", "line": 158, "excerpt": "…NWATER_FAMILY?.000018:normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?.00002:.000012)*g.processing*g.metabolicPace,maintenance:(.00014+.000052*g.bodySize**2+.000025*g.sensingRange+.000025*…" }, { "file": "../model.js", "line": 173, "excerpt": "…ropulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','divisionTempo']," }, { "file": "../grazer.js", "line": 82, "excerpt": "…:'activity';g.reason=quietDigest?'Digesting while activity is low or a full vacuole needs processing':fullness>=.85?'Vacuole full; moving while food processes':`Energy ${Math.round(member.en…" }, { "file": "../population.js", "line": 532, "excerpt": "…nUntil=now+FEED_COOLDOWN_MS;g.action='digest';g.drive='conserve';g.reason='Prey ingested; processing meal';if(prey.grazer?.vacuole.mass)depositAt(state,prey.cell,prey.grazer.vacuole.mass);if…" } ], "propulsion": [ { "file": "../model.js", "line": 80, "excerpt": " propulsion:{min:0,max:1,default:.35,unit:'active thrust',category:'locomotion / depth',role:'Swimmin…" }, { "file": "../model.js", "line": 95, "excerpt": " propulsion:{min:0,max:1,default:.6,unit:'ciliary thrust',category:'locomotion',role:'Swimming force'…" }, { "file": "../model.js", "line": 109, "excerpt": "…_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE…" }, { "file": "../model.js", "line": 109, "excerpt": "…bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence…" }, { "file": "../model.js", "line": 131, "excerpt": "…genome?.locomotionFamily===CRAWLER_FAMILY&&(genome.genes?.bodySize||1)<.9&&(genome.genes?.propulsion||0)>=.65;" }, { "file": "../model.js", "line": 158, "excerpt": "…ELLATE_FAMILY?.000004:normalized.locomotionFamily===CARNIVORE_FAMILY?.0000095:.0000088)*g.propulsion,headingMemory:.3+3.7*g.turnPersistence,optimum:g.thermalOptimum,sensingRadius:.17*g.sensi…" }, { "file": "../model.js", "line": 158, "excerpt": "…y===APEX_FAMILY?.00020:normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?.00022:.00016)*g.propulsion};" }, { "file": "../model.js", "line": 159, "excerpt": "…malized.locomotionFamily!==ALGA_FAMILY)return {radius:.029*g.bodySize,thrust:.00000015*(g.propulsion??g.contractility??0),headingMemory:.3+3.7*(g.turnPersistence??.5),optimum:g.thermalOptimu…" }, { "file": "../model.js", "line": 159, "excerpt": "….000035*g.bodySize**2+.00002*(g.sporeInvestment||0))*g.metabolicPace,activeCost:.00010*(g.propulsion??g.contractility??0)};" }, { "file": "../model.js", "line": 162, "excerpt": " thrust:.00000018*g.propulsion," }, { "file": "../model.js", "line": 168, "excerpt": " activeCost:.00013*g.propulsion" }, { "file": "../model.js", "line": 173, "excerpt": " consumer:['bodySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processin…" }, { "file": "../model.js", "line": 174, "excerpt": " alga:['bodySize','propulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOp…" }, { "file": "../model.js", "line": 175, "excerpt": " prototype:['bodySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeInvestment']" }, { "file": "../model.js", "line": 261, "excerpt": " const beforeEnergy=state.energy,active=state.energy>0&&g.propulsion>0,drive=state.energy<28?1:state.bio?.drive??1,fuelFactor=movementFuelFactor(state.energy,…" }, { "file": "../population.js", "line": 115, "excerpt": " for(let i=0;irecord.id===alga.id).genome=copy(alga.genome);" }, { "file": "../population.js", "line": 579, "excerpt": "…izeGenome(genome)),changes=[],rules=geneRules(result);for(const gene of ['metabolicPace','propulsion','contractility','buoyancy','slowdownThreshold']){if(!(gene in rules))continue;const old=…" }, { "file": "../locomotion.js", "line": 17, "excerpt": "…e(state.environment.volume),now=state.elapsed,active=member.energy>0&&member.genome.genes.propulsion>0,fuelFactor=movementFuelFactor(member.energy,member.genome);" }, { "file": "../locomotion.js", "line": 34, "excerpt": " const crawling=family===CRAWLER_FAMILY,drive=active&&member.genome.genes.propulsion>0&&(crawling?m.mode==='anchor':true),speed=(crawling?.00003/Math.sqrt(scale):.000024/scal…" }, { "file": "../locomotion.js", "line": 34, "excerpt": "…'anchor':true),speed=(crawling?.00003/Math.sqrt(scale):.000024/scale)*member.genome.genes.propulsion*(m.tempo??1),v=drive?speed*activity*fuelFactor:0;c.vx=c.vx*.55+Math.cos(c.heading)*v*.45;…" }, { "file": "../appearance.js", "line": 98, "excerpt": " if((genes.bodySize||1)<.79&&(genes.propulsion||0)>.67)return looks.dart;" }, { "file": "../appearance.js", "line": 106, "excerpt": " if(family===FLOOR_HUNTER_FAMILY)return genes.bodySize>=1.45&&genes.propulsion<.55?looks.amoeba_proteus:looks.siltfang;" }, { "file": "../appearance.js", "line": 113, "excerpt": " if(genes.propulsion>=.95&&genes.turnPersistence>=.8)return looks.paramecium;" }, { "file": "../appearance.js", "line": 132, "excerpt": " if((genes.bodySize||1)<.77&&(genes.propulsion||0)>.9)return looks.ash;" } ], "releaseCooldown": [ { "file": "../regulation.js", "line": 12, "excerpt": " releaseCooldown:{min:0,max:1,default:.55,unit:'recovery setting',category:'release regulation',role:'Refr…" }, { "file": "../regulation.js", "line": 16, "excerpt": "export const releaseCooldownMs=g=>Math.round(1000+7000*(g.releaseCooldown??.55));" }, { "file": "../regulation.js", "line": 23, "excerpt": " releaseThreshold:.1,releaseGain:1,releasePulse:.5,releaseCooldown:.55,releaseReserve:5};" } ], "releaseGain": [ { "file": "../regulation.js", "line": 10, "excerpt": " releaseGain:{min:0,max:1,default:1,unit:'output fraction',category:'release regulation',role:'Request…" }, { "file": "../regulation.js", "line": 23, "excerpt": " releaseThreshold:.1,releaseGain:1,releasePulse:.5,releaseCooldown:.55,releaseReserve:5};" }, { "file": "../regulation.js", "line": 32, "excerpt": " const input=releaseInput(program,inputs),gain=g.releaseGain??1,threshold=g.releaseThreshold??.25,reserve=g.releaseReserve??5;" } ], "releasePulse": [ { "file": "../regulation.js", "line": 11, "excerpt": " releasePulse:{min:0,max:1,default:.5,unit:'duration setting',category:'release regulation',role:'Pulse…" }, { "file": "../regulation.js", "line": 15, "excerpt": "export const releasePulseMs=g=>Math.round(600+3200*(g.releasePulse??.5));" }, { "file": "../regulation.js", "line": 23, "excerpt": " releaseThreshold:.1,releaseGain:1,releasePulse:.5,releaseCooldown:.55,releaseReserve:5};" } ], "releaseReserve": [ { "file": "../regulation.js", "line": 13, "excerpt": " releaseReserve:{min:0,max:100,default:5,unit:'energy units',category:'release regulation',role:'Protecte…" }, { "file": "../regulation.js", "line": 23, "excerpt": " releaseThreshold:.1,releaseGain:1,releasePulse:.5,releaseCooldown:.55,releaseReserve:5};" }, { "file": "../regulation.js", "line": 32, "excerpt": "…seInput(program,inputs),gain=g.releaseGain??1,threshold=g.releaseThreshold??.25,reserve=g.releaseReserve??5;" }, { "file": "../chemistry.js", "line": 52, "excerpt": "…r.biomass-quantity<.1)||(!toxin&&member.energy(g.releaseReserve??5);" }, { "file": "../signals.js", "line": 50, "excerpt": " const available=Math.max(0,member.energy-(g.releaseReserve??5)-upkeep),pulseCost=Math.min(available,requested*dt*.0012);" } ], "releaseThreshold": [ { "file": "../regulation.js", "line": 9, "excerpt": " releaseThreshold:{min:0,max:1,default:.25,unit:'input fraction',category:'release regulation',role:'Releas…" }, { "file": "../regulation.js", "line": 23, "excerpt": " releaseThreshold:.1,releaseGain:1,releasePulse:.5,releaseCooldown:.55,releaseReserve:5};" }, { "file": "../regulation.js", "line": 32, "excerpt": " const input=releaseInput(program,inputs),gain=g.releaseGain??1,threshold=g.releaseThreshold??.25,reserve=g.releaseReserve??5;" } ], "reserveAllocation": [ { "file": "../model.js", "line": 76, "excerpt": " reserveAllocation:{min:0,max:1,default:0,unit:'surplus allocation',category:'survival',role:'Photosynthate …" }, { "file": "../model.js", "line": 263, "excerpt": "…=Math.max(0,state.reserve||0),reserveRoom=Math.max(0,reserveCapacity-stored),allocation=g.reserveAllocation??0;" }, { "file": "../population.js", "line": 53, "excerpt": "…esion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatInvestment'].includes(key))&&genome.genes[key]===undefine…" }, { "file": "../adaptations.js", "line": 6, "excerpt": "…erve:Object.freeze({id:'reserve',version:1,family:ALGA_FAMILY,genes:['storageInvestment','reserveAllocation','mobilization'],capacity:g=>80*(g.storageInvestment??0),states:['inactive','charging','r…" } ], "rhythmPhase": [ { "file": "../model.js", "line": 38, "excerpt": " rhythmPhase:{min:0,max:1,default:0,unit:'cycle turn',category:'activity',role:'Preferred internal pha…" }, { "file": "../grazer.js", "line": 15, "excerpt": "…ion localPreySenseRange(member,environment){const genes=member.genome.genes,phase=((genes.rhythmPhase??0)%1+1)%1,diurnal=(genes.rhythmStrength??0)>=.08&&(genes.twilightPreference??0)<=.6&&(ph…" }, { "file": "../population.js", "line": 53, "excerpt": "…EGULATION_GENE_RULES||genome.version<3&&key in COMPOUND_GENE_RULES||genome.version===1&&['rhythmPhase','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','li…" }, { "file": "../population.js", "line": 325, "excerpt": "const ACQUIRABLE_LOCI=['thermalOptimum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambientSense'];" }, { "file": "../signals.js", "line": 22, "excerpt": "…genome){const g=genome?.genes;if(!Number.isFinite(g?.rhythmStrength)||!Number.isFinite(g?.rhythmPhase))return 'unavailable';if(g.rhythmStrength<.08)return 'flexible';if((g.twilightPreference?…" }, { "file": "../signals.js", "line": 22, "excerpt": "…'flexible';if((g.twilightPreference??0)>.6)return 'crepuscular';return circularDistance(g.rhythmPhase,.5)<.25?'nocturnal':'diurnal'}" }, { "file": "../signals.js", "line": 23, "excerpt": "…e.genes,strength=g.rhythmStrength??0;if(strength<.08)return 1;const shifted=turn(phase-(g.rhythmPhase??0));const single=(1+Math.cos(shifted*2*Math.PI))/2,twin=(1-Math.cos(shifted*4*Math.PI))/…" } ], "rhythmStrength": [ { "file": "../model.js", "line": 39, "excerpt": " rhythmStrength:{min:0,max:1,default:0,unit:'activity bias',category:'activity',role:'Daily rhythm streng…" }, { "file": "../grazer.js", "line": 15, "excerpt": "…ment){const genes=member.genome.genes,phase=((genes.rhythmPhase??0)%1+1)%1,diurnal=(genes.rhythmStrength??0)>=.08&&(genes.twilightPreference??0)<=.6&&(phase<.25||phase>=.75)&&(genes.ambientSense…" }, { "file": "../population.js", "line": 53, "excerpt": "…_RULES||genome.version<3&&key in COMPOUND_GENE_RULES||genome.version===1&&['rhythmPhase','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','di…" }, { "file": "../population.js", "line": 325, "excerpt": "const ACQUIRABLE_LOCI=['thermalOptimum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambientSense'];" }, { "file": "../signals.js", "line": 22, "excerpt": "export function activityProfile(genome){const g=genome?.genes;if(!Number.isFinite(g?.rhythmStrength)||!Number.isFinite(g?.rhythmPhase))return 'unavailable';if(g.rhythmStrength<.08)return 'f…" }, { "file": "../signals.js", "line": 22, "excerpt": "…r.isFinite(g?.rhythmStrength)||!Number.isFinite(g?.rhythmPhase))return 'unavailable';if(g.rhythmStrength<.08)return 'flexible';if((g.twilightPreference??0)>.6)return 'crepuscular';return circula…" }, { "file": "../signals.js", "line": 23, "excerpt": "export function activityDrive(genome,phase){const g=genome.genes,strength=g.rhythmStrength??0;if(strength<.08)return 1;const shifted=turn(phase-(g.rhythmPhase??0));const single=(1+…" }, { "file": "../appearance.js", "line": 104, "excerpt": " if(family===OMNIVORE_FAMILY)return (genes.rhythmStrength||0)>.75&&(genes.directionalSense||0)>.8?looks.gloammouth:(genes.bodySize||1)<1?looks.flec…" }, { "file": "../appearance.js", "line": 108, "excerpt": " if(family===CARNIVORE_FAMILY)return (genes.emissionCapacity||0)>.85&&(genes.rhythmStrength||0)>.85?looks.lurejaw:(genes.bodySize||1)>=1.3?looks.broadmouth:looks.raptor;" }, { "file": "../appearance.js", "line": 112, "excerpt": " if((genes.rhythmStrength||0)>.9&&(genes.directionalSense||0)>.9)return looks.nightglass;" }, { "file": "../appearance.js", "line": 120, "excerpt": " if((genes.rhythmStrength||0)>.8&&(genes.directionalSense||0)>.85)return looks.dusktail;" }, { "file": "../appearance.js", "line": 126, "excerpt": " if((genes.rhythmStrength||0)>.8&&(genes.emissionCapacity||0)>.6)return looks.lanternsifter;" } ], "sensingRange": [ { "file": "../model.js", "line": 99, "excerpt": " sensingRange:{min:.5,max:1.5,default:1,unit:'relative range',category:'sensing',role:'Local prey detec…" }, { "file": "../model.js", "line": 158, "excerpt": "…lsion,headingMemory:.3+3.7*g.turnPersistence,optimum:g.thermalOptimum,sensingRadius:.17*g.sensingRange,mouthRatio:g.feedingAperture,vacuoleCapacity:normalized.locomotionFamily===OMNIVORE_FAMIL…" }, { "file": "../model.js", "line": 158, "excerpt": "….000012)*g.processing*g.metabolicPace,maintenance:(.00014+.000052*g.bodySize**2+.000025*g.sensingRange+.000025*g.feedingAperture+.000018*g.storage+.000025*g.flocking+.000025*(g.cannibalism||0)…" }, { "file": "../model.js", "line": 173, "excerpt": " consumer:['bodySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acqui…" }, { "file": "../grazer.js", "line": 12, "excerpt": "export const grazerSenseRange=(genome,volume=1)=>.17*(genome.genes?.sensingRange??phenotype(genome).sensingRadius/.17)*Math.sqrt(volumeScale(volume));" }, { "file": "../appearance.js", "line": 115, "excerpt": " if((genes.bodySize||1)<.86&&(genes.sensingRange||0)>=1.2)return looks.patient_ciliate;" } ], "sensoryResistance": [ { "file": "../model.js", "line": 55, "excerpt": " sensoryResistance:{min:0,max:1,default:0,unit:'specific resistance',category:'chemical defense',role:'Senso…" }, { "file": "../model.js", "line": 127, "excerpt": "…urbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxification','organicProduction','organicReception','alarmProduction','alarmReceptio…" }, { "file": "../population.js", "line": 53, "excerpt": "…debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistance','detoxification'].includes(key)||genome.locomotionFamily===ALGA_FAMILY&&['adhesion','bio…" }, { "file": "../toxicology.js", "line": 20, "excerpt": "…eep=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0)),paid=Math.min(member.energy,upkeep);member.energy-=paid;" }, { "file": "../toxicology.js", "line": 24, "excerpt": "…st+=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxification||0));const paid=Math.min(member.energy,cost);member.energy-=paid;re…" } ], "slowdownThreshold": [ { "file": "../model.js", "line": 20, "excerpt": "export function movementFuelFactor(energy,genome){const ceiling=genome?.genes?.slowdownThreshold??35;return Math.log1p(9*Math.min(1,Math.max(0,energy)/ceiling))/Math.log(10)}" }, { "file": "../model.js", "line": 81, "excerpt": " slowdownThreshold:{min:10,max:70,default:35,unit:'energy / 100',category:'locomotion / energy',role:'Fuel s…" }, { "file": "../model.js", "line": 96, "excerpt": " slowdownThreshold:GENE_RULES.slowdownThreshold," }, { "file": "../model.js", "line": 96, "excerpt": " slowdownThreshold:GENE_RULES.slowdownThreshold," }, { "file": "../model.js", "line": 109, "excerpt": "…NE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GE…" }, { "file": "../model.js", "line": 109, "excerpt": "…ce:GENE_RULES.metabolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GENE_RULES.thermalOptimum,spore…" }, { "file": "../model.js", "line": 111, "excerpt": "…_RULES=Object.freeze({bodySize:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.slowdownThreshold,contractility:{min:0,max:1,default:.6,unit:'stalk effort',ca…" }, { "file": "../model.js", "line": 111, "excerpt": "…e:GENE_RULES.bodySize,metabolicPace:GENE_RULES.metabolicPace,slowdownThreshold:GENE_RULES.slowdownThreshold,contractility:{min:0,max:1,default:.6,unit:'stalk effort',category:'locomotion',role:'Con…" }, { "file": "../population.js", "line": 53, "excerpt": "…hotoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance…" }, { "file": "../population.js", "line": 579, "excerpt": "…Rules(result);for(const gene of ['metabolicPace','propulsion','contractility','buoyancy','slowdownThreshold']){if(!(gene in rules))continue;const old=result.genes[gene];if(!['metabolicPace','buoyan…" }, { "file": "../population.js", "line": 579, "excerpt": "…f(!(gene in rules))continue;const old=result.genes[gene];if(!['metabolicPace','buoyancy','slowdownThreshold'].includes(gene)&&old<=0)continue;const range=gene==='metabolicPace'?.04:gene==='buoyancy…" }, { "file": "../population.js", "line": 579, "excerpt": "…ne)&&old<=0)continue;const range=gene==='metabolicPace'?.04:gene==='buoyancy'?.04:gene==='slowdownThreshold'?7:.08,next=clamp(old+(['buoyancy','slowdownThreshold'].includes(gene)?(random(pop)*2-1)*…" }, { "file": "../population.js", "line": 579, "excerpt": "…'?.04:gene==='buoyancy'?.04:gene==='slowdownThreshold'?7:.08,next=clamp(old+(['buoyancy','slowdownThreshold'].includes(gene)?(random(pop)*2-1)*range:old*(random(pop)*2-1)*range),rules[gene].min,rul…" } ], "socialProduction": [ { "file": "../model.js", "line": 127, "excerpt": "…etoxification','organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'];" }, { "file": "../regulation.js", "line": 22, "excerpt": " socialProgram:(g.socialProduction||0)>0?alga?4:1:0," }, { "file": "../compounds.js", "line": 13, "excerpt": "…',reception:'alarmReception',response:'alarmResponse'}),social:Object.freeze({production:'socialProduction',reception:'socialReception',response:'socialResponse'})});" }, { "file": "../compounds.js", "line": 23, "excerpt": " socialProduction:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flockin…" }, { "file": "../signals.js", "line": 48, "excerpt": "…nst apparatus=['organicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'].reduce((sum,key)=>sum+(g[key]||0),0);" } ], "socialProgram": [ { "file": "../regulation.js", "line": 8, "excerpt": " socialProgram:programRule('Social secretion trigger')," }, { "file": "../regulation.js", "line": 22, "excerpt": " socialProgram:(g.socialProduction||0)>0?alga?4:1:0," }, { "file": "../signals.js", "line": 49, "excerpt": " const regulatorCost=.000004*[\"lightProgram\",\"organicProgram\",\"alarmProgram\",\"socialProgram\"].reduce((sum,key)=>sum+(g[key]>0?1:0),0);const upkeep=dt*(.000018*metabolicActivityFacto…" } ], "socialReception": [ { "file": "../model.js", "line": 127, "excerpt": "…anicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'];" }, { "file": "../compounds.js", "line": 13, "excerpt": "…response:'alarmResponse'}),social:Object.freeze({production:'socialProduction',reception:'socialReception',response:'socialResponse'})});" }, { "file": "../compounds.js", "line": 23, "excerpt": " socialProduction:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialResponse:.45" }, { "file": "../signals.js", "line": 48, "excerpt": "…anicProduction','organicReception','alarmProduction','alarmReception','socialProduction','socialReception'].reduce((sum,key)=>sum+(g[key]||0),0);" } ], "socialResponse": [ { "file": "../compounds.js", "line": 13, "excerpt": "…social:Object.freeze({production:'socialProduction',reception:'socialReception',response:'socialResponse'})});" }, { "file": "../compounds.js", "line": 23, "excerpt": "…g??0,g.crossAffinity??0),socialReception:sense*Math.max(g.flocking??0,g.crossAffinity??0),socialResponse:.45" } ], "spectralCenter": [ { "file": "../model.js", "line": 46, "excerpt": " spectralCenter:{min:0,max:1,default:0,unit:'spectrum turn',category:'sensing',role:'Detector color prefe…" }, { "file": "../population.js", "line": 53, "excerpt": "…ence','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','e…" }, { "file": "../signals.js", "line": 26, "excerpt": "…E)return 0;const bandwidth=rg.spectralWidth??1,spectral=Math.exp(-.5*(circularDistance(rg.spectralCenter??0,sg.emissionBand??0)/(.06+.26*bandwidth))**2);return clamp(power*investment*spectral/(1…" } ], "spectralWidth": [ { "file": "../model.js", "line": 47, "excerpt": " spectralWidth:{min:.1,max:1,default:1,unit:'relative bandwidth',category:'sensing',role:'Detector bandw…" }, { "file": "../population.js", "line": 53, "excerpt": "…t','ambientSense','lightPreference','lightTolerance','directionalSense','spectralCenter','spectralWidth','chemicalSense','disturbanceSense','emissionCapacity','emissionPower','emissionBand'].in…" }, { "file": "../signals.js", "line": 26, "excerpt": "…r.cell.z)*DEPTH_ASPECT)*volumeScale(volume);if(d>SIGNAL_RANGE)return 0;const bandwidth=rg.spectralWidth??1,spectral=Math.exp(-.5*(circularDistance(rg.spectralCenter??0,sg.emissionBand??0)/(.06+…" } ], "sporeInvestment": [ { "file": "../model.js", "line": 109, "excerpt": "…shold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GENE_RULES.thermalOptimum,sporeInvestment:{min:0,max:1,default:0,unit:'propagule investment',category:'reproduction',role:'Asexual …" }, { "file": "../model.js", "line": 159, "excerpt": "…stence??.5),optimum:g.thermalOptimum,maintenance:(.000055+.000035*g.bodySize**2+.00002*(g.sporeInvestment||0))*g.metabolicPace,activeCost:.00010*(g.propulsion??g.contractility??0)};" }, { "file": "../model.js", "line": 175, "excerpt": "…odySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeInvestment']" }, { "file": "../population.js", "line": 53, "excerpt": "…','cannibalism','photoGlowThreshold','fusionCapacity','matingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistan…" }, { "file": "../propagules.js", "line": 11, "excerpt": "…ssAffinity??0)>=.5)return 'gamete';if(member.genome.locomotionFamily===CRAWLER_FAMILY&&(g.sporeInvestment??0)>=.7)return 'spore';return null}" } ], "storage": [ { "file": "../model.js", "line": 75, "excerpt": "…estment:{min:0,max:1,default:0,unit:'reserve capacity',category:'survival',role:'Chemical storage tissue',effect:'Adds up to 80 energy units of capacity; storage tissue needs extra struct…" }, { "file": "../model.js", "line": 75, "excerpt": "…'survival',role:'Chemical storage tissue',effect:'Adds up to 80 energy units of capacity; storage tissue needs extra structural mineral',cost:'Raises body mass target and maintenance'}," }, { "file": "../model.js", "line": 102, "excerpt": " storage:{min:.6,max:1.6,default:1.2,unit:'relative vacuole',category:'digestion',role:'Food capac…" }, { "file": "../model.js", "line": 158, "excerpt": "…ngAperture,vacuoleCapacity:normalized.locomotionFamily===OMNIVORE_FAMILY?Math.min(6,2.2*g.storage*g.bodySize**3):normalized.locomotionFamily===OPENWATER_FAMILY?8:normalized.locomotionFami…" }, { "file": "../model.js", "line": 158, "excerpt": "…ionFamily===OPENWATER_FAMILY?8:normalized.locomotionFamily===APEX_FAMILY?Math.min(8,2.8*g.storage*g.bodySize**3):normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?Math.min(8,2.4*g.storage…" }, { "file": "../model.js", "line": 158, "excerpt": "…storage*g.bodySize**3):normalized.locomotionFamily===FLOOR_HUNTER_FAMILY?Math.min(8,2.4*g.storage*g.bodySize**3):(normalized.locomotionFamily===CARNIVORE_FAMILY?2.1:1.45)*g.storage*g.body…" }, { "file": "../model.js", "line": 158, "excerpt": "…,2.4*g.storage*g.bodySize**3):(normalized.locomotionFamily===CARNIVORE_FAMILY?2.1:1.45)*g.storage*g.bodySize**3,processingRate:(normalized.locomotionFamily===OPENWATER_FAMILY?.000018:norm…" }, { "file": "../model.js", "line": 158, "excerpt": "…:(.00014+.000052*g.bodySize**2+.000025*g.sensingRange+.000025*g.feedingAperture+.000018*g.storage+.000025*g.flocking+.000025*(g.cannibalism||0)+.00002*(g.acquisitionCapacity||0)+.000025*M…" }, { "file": "../model.js", "line": 173, "excerpt": "…dySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cannibalism','acquisitionCapacity','divisionTem…" } ], "storageInvestment": [ { "file": "../model.js", "line": 75, "excerpt": " storageInvestment:{min:0,max:1,default:0,unit:'reserve capacity',category:'survival',role:'Chemical storage…" }, { "file": "../model.js", "line": 127, "excerpt": "const massGenes=['bodySize','biomassDensity','storageInvestment','ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity',…" }, { "file": "../model.js", "line": 130, "excerpt": "…value=g.bodySize**3*(genome.locomotionFamily===ALGA_FAMILY?(g.biomassDensity??1)*(1+.1*(g.storageInvestment??0)):1)*(1+.035*sensorCost);massCache.set(genome,{family:genome.locomotionFamily,values:m…" }, { "file": "../model.js", "line": 142, "excerpt": " if((g.dormancy||0)>=.5&&(g.storageInvestment||0)>=.5)return 0;" }, { "file": "../model.js", "line": 167, "excerpt": "…sity-1)+.00003*Math.max(0,g.divisionTempo-1)+.000025*Math.max(0,g.foodEnergy-1)+.000045*g.storageInvestment+.000025*g.dormancy+.000065*g.coatInvestment)*g.metabolicPace," }, { "file": "../model.js", "line": 174, "excerpt": "…flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo','foodEnergy','storageInvestment','dormancy','coatInvestment']," }, { "file": "../model.js", "line": 263, "excerpt": " const reserveCapacity=80*(g.storageInvestment??0),stored=Math.max(0,state.reserve||0),reserveRoom=Math.max(0,reserveCapacity-stored),al…" }, { "file": "../population.js", "line": 53, "excerpt": "…==ALGA_FAMILY&&['adhesion','biomassDensity','divisionTempo','foodEnergy','crossAffinity','storageInvestment','reserveAllocation','mobilization','dormancy','coatInvestment'].includes(key))&&genome.g…" }, { "file": "../population.js", "line": 351, "excerpt": "…(state,child.cell,excessCoat)}child.reserve=Math.min(child.reserve,80*(child.genome.genes.storageInvestment??0));child.motion=freshMotion(child,state.environment.volume);if(parent.grazer){child.gra…" }, { "file": "../population.js", "line": 612, "excerpt": "… organism');if(m.reserve!==undefined&&(!positive(m.reserve)||m.reserve>80*(m.genome.genes.storageInvestment??0)+1e-8)||m.coat!==undefined&&(!positive(m.coat)||m.coat>coatCapacity(m.genome)+1e-8)||m…" }, { "file": "../adaptations.js", "line": 6, "excerpt": " reserve:Object.freeze({id:'reserve',version:1,family:ALGA_FAMILY,genes:['storageInvestment','reserveAllocation','mobilization'],capacity:g=>80*(g.storageInvestment??0),states:['ina…" }, { "file": "../adaptations.js", "line": 6, "excerpt": "…A_FAMILY,genes:['storageInvestment','reserveAllocation','mobilization'],capacity:g=>80*(g.storageInvestment??0),states:['inactive','charging','releasing','full'],cost:'20% charging loss; 15% mobili…" }, { "file": "../adaptations.js", "line": 7, "excerpt": " dormancy:Object.freeze({id:'dormancy',version:1,family:ALGA_FAMILY,genes:['dormancy','storageInvestment'],states:['active','entering','dormant','germinating'],entry:'12 s sustained local light,…" }, { "file": "../appearance.js", "line": 85, "excerpt": " if((genes.dormancy||0)>=.5&&(genes.storageInvestment||0)>=.5)return looks.sleepseed;" }, { "file": "../crispr.js", "line": 29, "excerpt": " if((member.reserve||0)>80*(genes.storageInvestment??0)+1e-8)throw Error('Reserve capacity is below the energy already stored');" } ], "thermalOptimum": [ { "file": "../model.js", "line": 86, "excerpt": " thermalOptimum:{min:5,max:40,default:22,unit:'°C',category:'metabolism',role:'Temperature preference',ef…" }, { "file": "../model.js", "line": 104, "excerpt": " thermalOptimum:GENE_RULES.thermalOptimum," }, { "file": "../model.js", "line": 104, "excerpt": " thermalOptimum:GENE_RULES.thermalOptimum," }, { "file": "../model.js", "line": 109, "excerpt": "…slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GENE_RULES.thermalOptimum,sporeInvestment:{min:0,max:1,default:0,unit:'propagule investme…" }, { "file": "../model.js", "line": 109, "excerpt": "…ES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GENE_RULES.thermalOptimum,sporeInvestment:{min:0,max:1,default:0,unit:'propagule investment',category:'reproduction…" }, { "file": "../model.js", "line": 110, "excerpt": "…g or rising',effect:'Changes current-driven vertical drift',cost:'No active swim energy'},thermalOptimum:GENE_RULES.thermalOptimum,...ECOLOGY_GENE_RULES});" }, { "file": "../model.js", "line": 110, "excerpt": "…es current-driven vertical drift',cost:'No active swim energy'},thermalOptimum:GENE_RULES.thermalOptimum,...ECOLOGY_GENE_RULES});" }, { "file": "../model.js", "line": 111, "excerpt": "…pacity',effect:'Sets contraction speed and cost',cost:'Active contraction spends energy'},thermalOptimum:GENE_RULES.thermalOptimum,...ECOLOGY_GENE_RULES});" }, { "file": "../model.js", "line": 111, "excerpt": "…action speed and cost',cost:'Active contraction spends energy'},thermalOptimum:GENE_RULES.thermalOptimum,...ECOLOGY_GENE_RULES});" }, { "file": "../model.js", "line": 158, "excerpt": "…E_FAMILY?.0000095:.0000088)*g.propulsion,headingMemory:.3+3.7*g.turnPersistence,optimum:g.thermalOptimum,sensingRadius:.17*g.sensingRange,mouthRatio:g.feedingAperture,vacuoleCapacity:normalized.…" }, { "file": "../model.js", "line": 159, "excerpt": "…(g.propulsion??g.contractility??0),headingMemory:.3+3.7*(g.turnPersistence??.5),optimum:g.thermalOptimum,maintenance:(.000055+.000035*g.bodySize**2+.00002*(g.sporeInvestment||0))*g.metabolicPace…" }, { "file": "../model.js", "line": 166, "excerpt": " optimum:g.thermalOptimum," }, { "file": "../model.js", "line": 173, "excerpt": " consumer:['bodySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace','flocking','cann…" }, { "file": "../model.js", "line": 174, "excerpt": "…ropulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion','flocking','crossAffinity','fusionCapacity','biomassDensity','divisionTempo',…" }, { "file": "../model.js", "line": 175, "excerpt": " prototype:['bodySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeInvestment']" }, { "file": "../population.js", "line": 325, "excerpt": "const ACQUIRABLE_LOCI=['thermalOptimum','metabolicPace','rhythmPhase','rhythmStrength','chemicalSense','disturbanceSense','ambie…" } ], "toxinRelease": [ { "file": "../model.js", "line": 52, "excerpt": " toxinRelease:{min:0,max:1,default:0,unit:'release propensity',category:'chemical defense',role:'Trigge…" }, { "file": "../population.js", "line": 53, "excerpt": "…itionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistance','detoxification'].includes(ke…" }, { "file": "../population.js", "line": 389, "excerpt": " if(quantity>=.00025&&(genes.toxinSynthesis??0)>=.5&&(genes.toxinRelease??0)>=.5&&(state.elapsed-bio.lastReleaseAt>=3000||state.elapsed===0&&bio.lastReleaseAt===0…" }, { "file": "../population.js", "line": 581, "excerpt": "…ory':null;if(toxinKind&&(member.genome.genes.toxinSynthesis??0)>=.5&&(member.genome.genes.toxinRelease??0)>=.5){const amount=Math.min(.0015,.004*member.genome.genes.toxinSynthesis,Math.max(0,m…" }, { "file": "../chemistry.js", "line": 49, "excerpt": "…genome.genes;if(channel.startsWith('toxin-'))return (genes.toxinSynthesis??0)>=.5&&(genes.toxinRelease??0)>=.5?genes.toxinSynthesis:0;return CUE_COMPOUNDS.includes(compound)?g[productionLocus(…" } ], "toxinSynthesis": [ { "file": "../model.js", "line": 51, "excerpt": " toxinSynthesis:{min:0,max:1,default:0,unit:'secretory investment',category:'chemical defense',role:'Fini…" }, { "file": "../model.js", "line": 127, "excerpt": "…,'ambientSense','directionalSense','chemicalSense','disturbanceSense','emissionCapacity','toxinSynthesis','irritantResistance','motorResistance','sensoryResistance','detoxification','organicProd…" }, { "file": "../population.js", "line": 53, "excerpt": "…tingType','acquisitionCapacity','sporeInvestment','slowdownThreshold','debrisMetabolism','toxinSynthesis','toxinRelease','irritantResistance','motorResistance','sensoryResistance','detoxificatio…" }, { "file": "../population.js", "line": 389, "excerpt": " if(quantity>=.00025&&(genes.toxinSynthesis??0)>=.5&&(genes.toxinRelease??0)>=.5&&(state.elapsed-bio.lastReleaseAt>=3000||state.elaps…" }, { "file": "../population.js", "line": 581, "excerpt": "…ome.locomotionFamily===CARNIVORE_FAMILY?'sensory':null;if(toxinKind&&(member.genome.genes.toxinSynthesis??0)>=.5&&(member.genome.genes.toxinRelease??0)>=.5){const amount=Math.min(.0015,.004*memb…" }, { "file": "../population.js", "line": 581, "excerpt": "…r.genome.genes.toxinRelease??0)>=.5){const amount=Math.min(.0015,.004*member.genome.genes.toxinSynthesis,Math.max(0,member.biomass-.12));if(amount>0&&member.energy>=20){member.toxinState??=fresh…" }, { "file": "../chemistry.js", "line": 49, "excerpt": "…apparatus(member),genes=member.genome.genes;if(channel.startsWith('toxin-'))return (genes.toxinSynthesis??0)>=.5&&(genes.toxinRelease??0)>=.5?genes.toxinSynthesis:0;return CUE_COMPOUNDS.includes…" }, { "file": "../chemistry.js", "line": 49, "excerpt": "…rtsWith('toxin-'))return (genes.toxinSynthesis??0)>=.5&&(genes.toxinRelease??0)>=.5?genes.toxinSynthesis:0;return CUE_COMPOUNDS.includes(compound)?g[productionLocus(compound)]||0:0}" }, { "file": "../toxicology.js", "line": 15, "excerpt": "…{const g=member.genome.genes,state=member.toxinState??=freshToxinState(),capacity=.004*(g.toxinSynthesis||0);if(!TOXINS[kind]||capacity<=0||member.energy<20)return 0;const amount=Math.min(capaci…" }, { "file": "../toxicology.js", "line": 15, "excerpt": "…ember.energy<20)return 0;const amount=Math.min(capacity-state.store[kind],dt*.00000008*(g.toxinSynthesis||0),Math.max(0,member.biomass-.12));if(amount<=0)return 0;member.biomass-=amount;state.st…" }, { "file": "../toxicology.js", "line": 20, "excerpt": " const upkeep=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxifi…" }, { "file": "../toxicology.js", "line": 24, "excerpt": " cost+=dt*.000006*((g.toxinSynthesis||0)+(g.irritantResistance||0)+(g.motorResistance||0)+(g.sensoryResistance||0)+(g.detoxifi…" }, { "file": "../crispr.js", "line": 32, "excerpt": "…||0)+(member.toxinState?.store?.motor||0)+(member.toxinState?.store?.sensory||0)>0&&genes.toxinSynthesis===0)throw Error('Stored toxin must clear before removing synthesis apparatus');" } ], "turnPersistence": [ { "file": "../model.js", "line": 82, "excerpt": " turnPersistence:{min:0,max:1,default:.55,unit:'heading memory',category:'locomotion / depth',role:'Headin…" }, { "file": "../model.js", "line": 97, "excerpt": " turnPersistence:GENE_RULES.turnPersistence," }, { "file": "../model.js", "line": 97, "excerpt": " turnPersistence:GENE_RULES.turnPersistence," }, { "file": "../model.js", "line": 109, "excerpt": "…bolicPace,propulsion:GENE_RULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GENE_RULES.thermalOptimum,sporeInvestment:{min:…" }, { "file": "../model.js", "line": 109, "excerpt": "…ULES.propulsion,slowdownThreshold:GENE_RULES.slowdownThreshold,turnPersistence:GENE_RULES.turnPersistence,thermalOptimum:GENE_RULES.thermalOptimum,sporeInvestment:{min:0,max:1,default:0,unit:'pro…" }, { "file": "../model.js", "line": 158, "excerpt": "…ocomotionFamily===CARNIVORE_FAMILY?.0000095:.0000088)*g.propulsion,headingMemory:.3+3.7*g.turnPersistence,optimum:g.thermalOptimum,sensingRadius:.17*g.sensingRange,mouthRatio:g.feedingAperture,va…" }, { "file": "../model.js", "line": 159, "excerpt": "…29*g.bodySize,thrust:.00000015*(g.propulsion??g.contractility??0),headingMemory:.3+3.7*(g.turnPersistence??.5),optimum:g.thermalOptimum,maintenance:(.000055+.000035*g.bodySize**2+.00002*(g.sporeI…" }, { "file": "../model.js", "line": 163, "excerpt": " headingMemory:.3+3.7*g.turnPersistence," }, { "file": "../model.js", "line": 173, "excerpt": " consumer:['bodySize','propulsion','turnPersistence','thermalOptimum','sensingRange','feedingAperture','storage','processing','metabolicPace'…" }, { "file": "../model.js", "line": 174, "excerpt": " alga:['bodySize','propulsion','turnPersistence','photosyntheticInvestment','metabolicPace','nutrientUptake','thermalOptimum','adhesion',…" }, { "file": "../model.js", "line": 175, "excerpt": " prototype:['bodySize','propulsion','contractility','turnPersistence','thermalOptimum','metabolicPace','sporeInvestment']" }, { "file": "../locomotion.js", "line": 31, "excerpt": " if(family===CRAWLER_FAMILY&&member.genome.genes.bodySize>=1.2&&member.genome.genes.turnPersistence>=.9&&!nearest){const old=m.trail.slice(0,-3);const choices=[-.9,-.45,0,.45,.9].map(delta=…" }, { "file": "../locomotion.js", "line": 32, "excerpt": " if(family===CRAWLER_FAMILY&&member.genome.genes.bodySize<.77&&member.genome.genes.turnPersistence<.3&&member.energy<35){let sumX=0,sumY=0,count=0;for(const other of state.population.livin…" }, { "file": "../appearance.js", "line": 113, "excerpt": " if(genes.propulsion>=.95&&genes.turnPersistence>=.8)return looks.paramecium;" }, { "file": "../appearance.js", "line": 127, "excerpt": " if(genes.bodySize>=1.4&&genes.turnPersistence<.3)return looks.fuligo;" }, { "file": "../appearance.js", "line": 128, "excerpt": " if(genes.bodySize>=1.2&&genes.turnPersistence>=.9)return looks.physarum;" }, { "file": "../appearance.js", "line": 129, "excerpt": " if(genes.bodySize<.77&&genes.turnPersistence<.3)return looks.dicty;" } ], "twilightPreference": [ { "file": "../model.js", "line": 40, "excerpt": " twilightPreference:{min:0,max:1,default:0,unit:'two-window tendency',category:'activity',role:'Dawn and dusk…" }, { "file": "../grazer.js", "line": 15, "excerpt": "…genes,phase=((genes.rhythmPhase??0)%1+1)%1,diurnal=(genes.rhythmStrength??0)>=.08&&(genes.twilightPreference??0)<=.6&&(phase<.25||phase>=.75)&&(genes.ambientSense??0)>0,light=member.bio?.ambientLamp…" }, { "file": "../population.js", "line": 53, "excerpt": "…rsion<3&&key in COMPOUND_GENE_RULES||genome.version===1&&['rhythmPhase','rhythmStrength','twilightPreference','entrainment','ambientSense','lightPreference','lightTolerance','directionalSense','spec…" }, { "file": "../signals.js", "line": 22, "excerpt": "…nite(g?.rhythmPhase))return 'unavailable';if(g.rhythmStrength<.08)return 'flexible';if((g.twilightPreference??0)>.6)return 'crepuscular';return circularDistance(g.rhythmPhase,.5)<.25?'nocturnal':'di…" }, { "file": "../signals.js", "line": 23, "excerpt": "…h.cos(shifted*2*Math.PI))/2,twin=(1-Math.cos(shifted*4*Math.PI))/2,preferred=single*(1-(g.twilightPreference??0))+twin*(g.twilightPreference??0);return clamp(1-strength*.82*(1-preferred),.18,1)}" }, { "file": "../signals.js", "line": 23, "excerpt": "…=(1-Math.cos(shifted*4*Math.PI))/2,preferred=single*(1-(g.twilightPreference??0))+twin*(g.twilightPreference??0);return clamp(1-strength*.82*(1-preferred),.18,1)}" } ] } }